Making all in include Making all in . make[2]: Nothing to be done for `all-am'. Making all in types make[2]: Nothing to be done for `all'. Making all in src make all-recursive Making all in gmxlib Making all in nonbonded Making all in nb_kernel_ia32_sse /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel010_ia32_sse.lo nb_kernel010_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel010_ia32_sse.s -o nb_kernel010_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel030_ia32_sse.lo nb_kernel030_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel030_ia32_sse.s -o nb_kernel030_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel100_ia32_sse.lo nb_kernel100_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel100_ia32_sse.s -o nb_kernel100_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel101_ia32_sse.lo nb_kernel101_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel101_ia32_sse.s -o nb_kernel101_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel102_ia32_sse.lo nb_kernel102_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel102_ia32_sse.s -o nb_kernel102_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel103_ia32_sse.lo nb_kernel103_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel103_ia32_sse.s -o nb_kernel103_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel104_ia32_sse.lo nb_kernel104_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel104_ia32_sse.s -o nb_kernel104_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel110_ia32_sse.lo nb_kernel110_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel110_ia32_sse.s -o nb_kernel110_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel111_ia32_sse.lo nb_kernel111_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel111_ia32_sse.s -o nb_kernel111_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel112_ia32_sse.lo nb_kernel112_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel112_ia32_sse.s -o nb_kernel112_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel113_ia32_sse.lo nb_kernel113_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel113_ia32_sse.s -o nb_kernel113_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel114_ia32_sse.lo nb_kernel114_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel114_ia32_sse.s -o nb_kernel114_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel130_ia32_sse.lo nb_kernel130_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel130_ia32_sse.s -o nb_kernel130_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel131_ia32_sse.lo nb_kernel131_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel131_ia32_sse.s -o nb_kernel131_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel132_ia32_sse.lo nb_kernel132_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel132_ia32_sse.s -o nb_kernel132_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel133_ia32_sse.lo nb_kernel133_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel133_ia32_sse.s -o nb_kernel133_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel134_ia32_sse.lo nb_kernel134_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall 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-O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel202_ia32_sse.s -o nb_kernel202_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel203_ia32_sse.lo nb_kernel203_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel203_ia32_sse.s -o nb_kernel203_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel204_ia32_sse.lo nb_kernel204_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel204_ia32_sse.s -o nb_kernel204_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel210_ia32_sse.lo nb_kernel210_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel210_ia32_sse.s -o nb_kernel210_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel211_ia32_sse.lo nb_kernel211_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel211_ia32_sse.s -o nb_kernel211_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel212_ia32_sse.lo nb_kernel212_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel212_ia32_sse.s -o nb_kernel212_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel213_ia32_sse.lo nb_kernel213_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel213_ia32_sse.s -o nb_kernel213_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel214_ia32_sse.lo nb_kernel214_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel214_ia32_sse.s -o nb_kernel214_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel230_ia32_sse.lo nb_kernel230_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel230_ia32_sse.s -o nb_kernel230_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel231_ia32_sse.lo nb_kernel231_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel231_ia32_sse.s -o nb_kernel231_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel232_ia32_sse.lo nb_kernel232_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel232_ia32_sse.s -o nb_kernel232_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel233_ia32_sse.lo nb_kernel233_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel233_ia32_sse.s -o nb_kernel233_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel234_ia32_sse.lo nb_kernel234_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel234_ia32_sse.s -o nb_kernel234_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel300_ia32_sse.lo nb_kernel300_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel300_ia32_sse.s -o nb_kernel300_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel301_ia32_sse.lo nb_kernel301_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double 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nb_kernel312_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel312_ia32_sse.s -o nb_kernel312_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel313_ia32_sse.lo nb_kernel313_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel313_ia32_sse.s -o nb_kernel313_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel314_ia32_sse.lo nb_kernel314_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel314_ia32_sse.s -o nb_kernel314_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double 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../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel410_ia32_sse.lo nb_kernel410_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel410_ia32_sse.s -o nb_kernel410_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel430_ia32_sse.lo nb_kernel430_ia32_sse.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel430_ia32_sse.s -o nb_kernel430_ia32_sse.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel_ia32_sse_test_asm.lo nb_kernel_ia32_sse_test_asm.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel_ia32_sse_test_asm.s -o nb_kernel_ia32_sse_test_asm.o /bin/sh ../../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel_ia32_sse.lo -MD -MP -MF .deps/nb_kernel_ia32_sse.Tpo -c -o nb_kernel_ia32_sse.lo nb_kernel_ia32_sse.c cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel_ia32_sse.lo -MD -MP -MF .deps/nb_kernel_ia32_sse.Tpo -c nb_kernel_ia32_sse.c -o nb_kernel_ia32_sse.o mv -f .deps/nb_kernel_ia32_sse.Tpo .deps/nb_kernel_ia32_sse.Plo /bin/sh ../../../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o libnb_kernel_ia32_sse.la nb_kernel010_ia32_sse.lo nb_kernel030_ia32_sse.lo nb_kernel100_ia32_sse.lo nb_kernel101_ia32_sse.lo nb_kernel102_ia32_sse.lo nb_kernel103_ia32_sse.lo nb_kernel104_ia32_sse.lo nb_kernel110_ia32_sse.lo nb_kernel111_ia32_sse.lo nb_kernel112_ia32_sse.lo nb_kernel113_ia32_sse.lo nb_kernel114_ia32_sse.lo nb_kernel130_ia32_sse.lo nb_kernel131_ia32_sse.lo nb_kernel132_ia32_sse.lo nb_kernel133_ia32_sse.lo nb_kernel134_ia32_sse.lo nb_kernel200_ia32_sse.lo nb_kernel201_ia32_sse.lo nb_kernel202_ia32_sse.lo nb_kernel203_ia32_sse.lo nb_kernel204_ia32_sse.lo nb_kernel210_ia32_sse.lo nb_kernel211_ia32_sse.lo nb_kernel212_ia32_sse.lo nb_kernel213_ia32_sse.lo nb_kernel214_ia32_sse.lo nb_kernel230_ia32_sse.lo nb_kernel231_ia32_sse.lo nb_kernel232_ia32_sse.lo nb_kernel233_ia32_sse.lo nb_kernel234_ia32_sse.lo nb_kernel300_ia32_sse.lo nb_kernel301_ia32_sse.lo nb_kernel302_ia32_sse.lo nb_kernel303_ia32_sse.lo nb_kernel304_ia32_sse.lo nb_kernel310_ia32_sse.lo nb_kernel311_ia32_sse.lo nb_kernel312_ia32_sse.lo nb_kernel313_ia32_sse.lo nb_kernel314_ia32_sse.lo nb_kernel330_ia32_sse.lo nb_kernel331_ia32_sse.lo nb_kernel332_ia32_sse.lo nb_kernel333_ia32_sse.lo nb_kernel334_ia32_sse.lo nb_kernel400_ia32_sse.lo nb_kernel410_ia32_sse.lo nb_kernel430_ia32_sse.lo nb_kernel_ia32_sse_test_asm.lo nb_kernel_ia32_sse.lo -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 mkdir .libs ar cru .libs/libnb_kernel_ia32_sse.a nb_kernel010_ia32_sse.o nb_kernel030_ia32_sse.o nb_kernel100_ia32_sse.o nb_kernel101_ia32_sse.o nb_kernel102_ia32_sse.o nb_kernel103_ia32_sse.o nb_kernel104_ia32_sse.o nb_kernel110_ia32_sse.o nb_kernel111_ia32_sse.o nb_kernel112_ia32_sse.o nb_kernel113_ia32_sse.o nb_kernel114_ia32_sse.o nb_kernel130_ia32_sse.o nb_kernel131_ia32_sse.o nb_kernel132_ia32_sse.o nb_kernel133_ia32_sse.o nb_kernel134_ia32_sse.o nb_kernel200_ia32_sse.o nb_kernel201_ia32_sse.o nb_kernel202_ia32_sse.o nb_kernel203_ia32_sse.o nb_kernel204_ia32_sse.o nb_kernel210_ia32_sse.o nb_kernel211_ia32_sse.o nb_kernel212_ia32_sse.o nb_kernel213_ia32_sse.o nb_kernel214_ia32_sse.o nb_kernel230_ia32_sse.o nb_kernel231_ia32_sse.o nb_kernel232_ia32_sse.o nb_kernel233_ia32_sse.o nb_kernel234_ia32_sse.o nb_kernel300_ia32_sse.o nb_kernel301_ia32_sse.o nb_kernel302_ia32_sse.o nb_kernel303_ia32_sse.o nb_kernel304_ia32_sse.o nb_kernel310_ia32_sse.o nb_kernel311_ia32_sse.o nb_kernel312_ia32_sse.o nb_kernel313_ia32_sse.o nb_kernel314_ia32_sse.o nb_kernel330_ia32_sse.o nb_kernel331_ia32_sse.o nb_kernel332_ia32_sse.o nb_kernel333_ia32_sse.o nb_kernel334_ia32_sse.o nb_kernel400_ia32_sse.o nb_kernel410_ia32_sse.o nb_kernel430_ia32_sse.o nb_kernel_ia32_sse_test_asm.o nb_kernel_ia32_sse.o ranlib .libs/libnb_kernel_ia32_sse.a creating libnb_kernel_ia32_sse.la (cd .libs && rm -f libnb_kernel_ia32_sse.la && ln -s ../libnb_kernel_ia32_sse.la libnb_kernel_ia32_sse.la) Making all in nb_kernel_ia32_3dnow /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel010_ia32_3dnow.lo nb_kernel010_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel010_ia32_3dnow.s -o nb_kernel010_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel030_ia32_3dnow.lo nb_kernel030_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel030_ia32_3dnow.s -o nb_kernel030_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel100_ia32_3dnow.lo nb_kernel100_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel100_ia32_3dnow.s -o nb_kernel100_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel101_ia32_3dnow.lo nb_kernel101_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel101_ia32_3dnow.s -o nb_kernel101_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel102_ia32_3dnow.lo nb_kernel102_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel102_ia32_3dnow.s -o nb_kernel102_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel110_ia32_3dnow.lo nb_kernel110_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel110_ia32_3dnow.s -o nb_kernel110_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel111_ia32_3dnow.lo nb_kernel111_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel111_ia32_3dnow.s -o nb_kernel111_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel112_ia32_3dnow.lo nb_kernel112_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel112_ia32_3dnow.s -o nb_kernel112_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel300_ia32_3dnow.lo nb_kernel300_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel300_ia32_3dnow.s -o nb_kernel300_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel301_ia32_3dnow.lo nb_kernel301_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel301_ia32_3dnow.s -o nb_kernel301_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel302_ia32_3dnow.lo nb_kernel302_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel302_ia32_3dnow.s -o nb_kernel302_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel310_ia32_3dnow.lo nb_kernel310_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel310_ia32_3dnow.s -o nb_kernel310_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel311_ia32_3dnow.lo nb_kernel311_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel311_ia32_3dnow.s -o nb_kernel311_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel312_ia32_3dnow.lo nb_kernel312_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel312_ia32_3dnow.s -o nb_kernel312_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel330_ia32_3dnow.lo nb_kernel330_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel330_ia32_3dnow.s -o nb_kernel330_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel331_ia32_3dnow.lo nb_kernel331_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel331_ia32_3dnow.s -o nb_kernel331_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel332_ia32_3dnow.lo nb_kernel332_ia32_3dnow.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel332_ia32_3dnow.s -o nb_kernel332_ia32_3dnow.o /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o nb_kernel_ia32_3dnow_test_asm.lo nb_kernel_ia32_3dnow_test_asm.s cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c nb_kernel_ia32_3dnow_test_asm.s -o nb_kernel_ia32_3dnow_test_asm.o /bin/sh ../../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel_ia32_3dnow.lo -MD -MP -MF .deps/nb_kernel_ia32_3dnow.Tpo -c -o nb_kernel_ia32_3dnow.lo nb_kernel_ia32_3dnow.c cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel_ia32_3dnow.lo -MD -MP -MF .deps/nb_kernel_ia32_3dnow.Tpo -c nb_kernel_ia32_3dnow.c -o nb_kernel_ia32_3dnow.o mv -f .deps/nb_kernel_ia32_3dnow.Tpo .deps/nb_kernel_ia32_3dnow.Plo /bin/sh ../../../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o libnb_kernel_ia32_3dnow.la nb_kernel010_ia32_3dnow.lo nb_kernel030_ia32_3dnow.lo nb_kernel100_ia32_3dnow.lo nb_kernel101_ia32_3dnow.lo nb_kernel102_ia32_3dnow.lo nb_kernel110_ia32_3dnow.lo nb_kernel111_ia32_3dnow.lo nb_kernel112_ia32_3dnow.lo nb_kernel300_ia32_3dnow.lo nb_kernel301_ia32_3dnow.lo nb_kernel302_ia32_3dnow.lo nb_kernel310_ia32_3dnow.lo nb_kernel311_ia32_3dnow.lo nb_kernel312_ia32_3dnow.lo nb_kernel330_ia32_3dnow.lo nb_kernel331_ia32_3dnow.lo nb_kernel332_ia32_3dnow.lo nb_kernel_ia32_3dnow_test_asm.lo nb_kernel_ia32_3dnow.lo -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 mkdir .libs ar cru .libs/libnb_kernel_ia32_3dnow.a nb_kernel010_ia32_3dnow.o nb_kernel030_ia32_3dnow.o nb_kernel100_ia32_3dnow.o nb_kernel101_ia32_3dnow.o nb_kernel102_ia32_3dnow.o nb_kernel110_ia32_3dnow.o nb_kernel111_ia32_3dnow.o nb_kernel112_ia32_3dnow.o nb_kernel300_ia32_3dnow.o nb_kernel301_ia32_3dnow.o nb_kernel302_ia32_3dnow.o nb_kernel310_ia32_3dnow.o nb_kernel311_ia32_3dnow.o nb_kernel312_ia32_3dnow.o nb_kernel330_ia32_3dnow.o nb_kernel331_ia32_3dnow.o nb_kernel332_ia32_3dnow.o nb_kernel_ia32_3dnow_test_asm.o nb_kernel_ia32_3dnow.o ranlib .libs/libnb_kernel_ia32_3dnow.a creating libnb_kernel_ia32_3dnow.la (cd .libs && rm -f libnb_kernel_ia32_3dnow.la && ln -s ../libnb_kernel_ia32_3dnow.la libnb_kernel_ia32_3dnow.la) Making all in nb_kernel cc -DHAVE_CONFIG_H -I. -I../../../../src -c -o mknb.o mknb.c cc -DHAVE_CONFIG_H -I. -I../../../../src -c -o mknb_metacode.o mknb_metacode.c cc -DHAVE_CONFIG_H -I. -I../../../../src -c -o mknb_common.o mknb_common.c cc -DHAVE_CONFIG_H -I. -I../../../../src -c -o mknb_declarations.o mknb_declarations.c cc -DHAVE_CONFIG_H -I. -I../../../../src -c -o mknb_outerloop.o mknb_outerloop.c cc -DHAVE_CONFIG_H -I. -I../../../../src -c -o mknb_innerloop.o mknb_innerloop.c cc -DHAVE_CONFIG_H -I. -I../../../../src -c -o mknb_interactions.o mknb_interactions.c cc -DHAVE_CONFIG_H -I. -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o rm -f kernel-stamp ./mknb -software_invsqrt >>> Gromacs nonbonded kernel generator (-h for help) >>> Generating single precision functions in C. >>> Using Gromacs software version of 1/sqrt(x). Progress: 1% Progress: 2% Progress: 4% Progress: 5% Progress: 7% Progress: 8% Progress: 10% Progress: 11% Progress: 13% Progress: 14% Progress: 16% Progress: 17% Progress: 19% Progress: 20% Progress: 22% Progress: 23% Progress: 25% Progress: 26% Progress: 28% Progress: 29% Progress: 31% Progress: 32% Progress: 34% Progress: 35% Progress: 37% Progress: 38% Progress: 40% Progress: 41% Progress: 43% Progress: 44% Progress: 46% Progress: 47% Progress: 49% Progress: 50% Progress: 52% Progress: 53% Progress: 55% Progress: 56% Progress: 58% Progress: 59% Progress: 61% Progress: 62% Progress: 64% Progress: 65% Progress: 67% Progress: 68% Progress: 70% Progress: 71% Progress: 73% Progress: 74% Progress: 76% Progress: 77% Progress: 79% Progress: 80% Progress: 82% Progress: 83% Progress: 85% Progress: 86% Progress: 88% Progress: 89% Progress: 91% Progress: 92% Progress: 94% Progress: 95% Progress: 97% Progress: 98% Progress: 100% make all-am /bin/sh ../../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel.lo -MD -MP -MF .deps/nb_kernel.Tpo -c -o nb_kernel.lo nb_kernel.c cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel.lo -MD -MP -MF .deps/nb_kernel.Tpo -c nb_kernel.c -o nb_kernel.o mv -f .deps/nb_kernel.Tpo .deps/nb_kernel.Plo /bin/sh ../../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel010_c.lo -MD -MP -MF .deps/nb_kernel010_c.Tpo -c -o nb_kernel010_c.lo nb_kernel010_c.c cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel010_c.lo -MD -MP -MF .deps/nb_kernel010_c.Tpo -c nb_kernel010_c.c -o nb_kernel010_c.o mv -f .deps/nb_kernel010_c.Tpo .deps/nb_kernel010_c.Plo /bin/sh ../../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel020_c.lo -MD -MP -MF .deps/nb_kernel020_c.Tpo -c -o nb_kernel020_c.lo nb_kernel020_c.c cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel020_c.lo -MD -MP -MF .deps/nb_kernel020_c.Tpo -c nb_kernel020_c.c -o nb_kernel020_c.o mv -f .deps/nb_kernel020_c.Tpo .deps/nb_kernel020_c.Plo /bin/sh ../../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel030_c.lo -MD -MP -MF .deps/nb_kernel030_c.Tpo -c -o nb_kernel030_c.lo nb_kernel030_c.c cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel030_c.lo -MD -MP -MF .deps/nb_kernel030_c.Tpo -c nb_kernel030_c.c -o nb_kernel030_c.o mv -f .deps/nb_kernel030_c.Tpo .deps/nb_kernel030_c.Plo 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/bin/sh ../../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel430_c.lo -MD -MP -MF .deps/nb_kernel430_c.Tpo -c -o nb_kernel430_c.lo nb_kernel430_c.c cc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/X11/include -I../../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_kernel430_c.lo -MD -MP -MF .deps/nb_kernel430_c.Tpo -c nb_kernel430_c.c -o nb_kernel430_c.o mv -f .deps/nb_kernel430_c.Tpo .deps/nb_kernel430_c.Plo /bin/sh ../../../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o libnb_kernel.la nb_kernel.lo nb_kernel010_c.lo nb_kernel020_c.lo nb_kernel030_c.lo nb_kernel100_c.lo nb_kernel101_c.lo nb_kernel102_c.lo nb_kernel103_c.lo nb_kernel104_c.lo nb_kernel110_c.lo nb_kernel111_c.lo nb_kernel112_c.lo nb_kernel113_c.lo nb_kernel114_c.lo nb_kernel120_c.lo nb_kernel121_c.lo nb_kernel122_c.lo nb_kernel123_c.lo nb_kernel124_c.lo nb_kernel130_c.lo nb_kernel131_c.lo nb_kernel132_c.lo nb_kernel133_c.lo nb_kernel134_c.lo nb_kernel200_c.lo nb_kernel201_c.lo nb_kernel202_c.lo nb_kernel203_c.lo nb_kernel204_c.lo nb_kernel210_c.lo nb_kernel211_c.lo nb_kernel212_c.lo nb_kernel213_c.lo nb_kernel214_c.lo nb_kernel220_c.lo nb_kernel221_c.lo nb_kernel222_c.lo nb_kernel223_c.lo nb_kernel224_c.lo nb_kernel230_c.lo nb_kernel231_c.lo nb_kernel232_c.lo nb_kernel233_c.lo nb_kernel234_c.lo nb_kernel300_c.lo nb_kernel301_c.lo nb_kernel302_c.lo nb_kernel303_c.lo nb_kernel304_c.lo nb_kernel310_c.lo nb_kernel311_c.lo nb_kernel312_c.lo nb_kernel313_c.lo nb_kernel314_c.lo nb_kernel320_c.lo nb_kernel321_c.lo nb_kernel322_c.lo nb_kernel323_c.lo nb_kernel324_c.lo nb_kernel330_c.lo nb_kernel331_c.lo nb_kernel332_c.lo nb_kernel333_c.lo nb_kernel334_c.lo nb_kernel400_c.lo nb_kernel410_c.lo nb_kernel420_c.lo nb_kernel430_c.lo -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 mkdir .libs ar cru .libs/libnb_kernel.a nb_kernel.o nb_kernel010_c.o nb_kernel020_c.o nb_kernel030_c.o nb_kernel100_c.o nb_kernel101_c.o nb_kernel102_c.o nb_kernel103_c.o nb_kernel104_c.o nb_kernel110_c.o nb_kernel111_c.o nb_kernel112_c.o nb_kernel113_c.o nb_kernel114_c.o nb_kernel120_c.o nb_kernel121_c.o nb_kernel122_c.o nb_kernel123_c.o nb_kernel124_c.o nb_kernel130_c.o nb_kernel131_c.o nb_kernel132_c.o nb_kernel133_c.o nb_kernel134_c.o nb_kernel200_c.o nb_kernel201_c.o nb_kernel202_c.o nb_kernel203_c.o nb_kernel204_c.o nb_kernel210_c.o nb_kernel211_c.o nb_kernel212_c.o nb_kernel213_c.o nb_kernel214_c.o nb_kernel220_c.o nb_kernel221_c.o nb_kernel222_c.o nb_kernel223_c.o nb_kernel224_c.o nb_kernel230_c.o nb_kernel231_c.o nb_kernel232_c.o nb_kernel233_c.o nb_kernel234_c.o nb_kernel300_c.o nb_kernel301_c.o nb_kernel302_c.o nb_kernel303_c.o nb_kernel304_c.o nb_kernel310_c.o nb_kernel311_c.o nb_kernel312_c.o nb_kernel313_c.o nb_kernel314_c.o nb_kernel320_c.o nb_kernel321_c.o nb_kernel322_c.o nb_kernel323_c.o nb_kernel324_c.o nb_kernel330_c.o nb_kernel331_c.o nb_kernel332_c.o nb_kernel333_c.o nb_kernel334_c.o nb_kernel400_c.o nb_kernel410_c.o nb_kernel420_c.o nb_kernel430_c.o ranlib .libs/libnb_kernel.a creating libnb_kernel.la (cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la) /bin/sh ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I/usr/X11/include -I../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nonbonded.lo -MD -MP -MF .deps/nonbonded.Tpo -c -o nonbonded.lo nonbonded.c cc -DHAVE_CONFIG_H -I. -I../../../src -I/usr/X11/include -I../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nonbonded.lo -MD -MP -MF .deps/nonbonded.Tpo -c nonbonded.c -o nonbonded.o mv -f .deps/nonbonded.Tpo .deps/nonbonded.Plo /bin/sh ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I/usr/X11/include -I../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_free_energy.lo -MD -MP -MF .deps/nb_free_energy.Tpo -c -o nb_free_energy.lo nb_free_energy.c cc -DHAVE_CONFIG_H -I. -I../../../src -I/usr/X11/include -I../../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nb_free_energy.lo -MD -MP -MF .deps/nb_free_energy.Tpo -c nb_free_energy.c -o nb_free_energy.o mv -f .deps/nb_free_energy.Tpo .deps/nb_free_energy.Plo /bin/sh ../../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o libnonbonded.la nonbonded.lo nb_free_energy.lo nb_kernel_ia32_sse/libnb_kernel_ia32_sse.la nb_kernel_ia32_3dnow/libnb_kernel_ia32_3dnow.la nb_kernel/libnb_kernel.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 mkdir .libs rm -fr .libs/libnonbonded.lax mkdir .libs/libnonbonded.lax rm -fr .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a mkdir .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a Extracting /Users/damianallis/Desktop/gromacsinstallation/gromacs-3.3.3/src/gmxlib/nonbonded/nb_kernel_ia32_sse/.libs/libnb_kernel_ia32_sse.a (cd .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a && ar x /Users/damianallis/Desktop/gromacsinstallation/gromacs-3.3.3/src/gmxlib/nonbonded/nb_kernel_ia32_sse/.libs/libnb_kernel_ia32_sse.a) rm -fr .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a mkdir .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a Extracting /Users/damianallis/Desktop/gromacsinstallation/gromacs-3.3.3/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/.libs/libnb_kernel_ia32_3dnow.a (cd .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a && ar x /Users/damianallis/Desktop/gromacsinstallation/gromacs-3.3.3/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/.libs/libnb_kernel_ia32_3dnow.a) rm -fr .libs/libnonbonded.lax/libnb_kernel.a mkdir .libs/libnonbonded.lax/libnb_kernel.a Extracting /Users/damianallis/Desktop/gromacsinstallation/gromacs-3.3.3/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a (cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /Users/damianallis/Desktop/gromacsinstallation/gromacs-3.3.3/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a) ar cru .libs/libnonbonded.a nonbonded.o nb_free_energy.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel010_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel030_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel100_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel101_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel102_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel103_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel104_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel110_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel111_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel112_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel113_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel114_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel130_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel131_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel132_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel133_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel134_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel200_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel201_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel202_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel203_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel204_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel210_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel211_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel212_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel213_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel214_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel230_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel231_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel232_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel233_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel234_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel300_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel301_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel302_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel303_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel304_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel310_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel311_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel312_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel313_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel314_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel330_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel331_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel332_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel333_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel334_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel400_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel410_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel430_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel_ia32_sse_test_asm.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel010_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel030_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel100_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel101_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel102_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel110_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel111_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel112_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel300_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel301_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel302_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel310_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel311_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel312_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel330_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel331_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel332_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel_ia32_3dnow_test_asm.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_c.o ranlib .libs/libnonbonded.a rm -fr .libs/libnonbonded.lax creating libnonbonded.la (cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la) /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT 3dview.lo -MD -MP -MF .deps/3dview.Tpo -c -o 3dview.lo 3dview.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT 3dview.lo -MD -MP -MF .deps/3dview.Tpo -c 3dview.c -o 3dview.o mv -f .deps/3dview.Tpo .deps/3dview.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT atomprop.lo -MD -MP -MF .deps/atomprop.Tpo -c -o atomprop.lo atomprop.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT atomprop.lo -MD -MP -MF .deps/atomprop.Tpo -c atomprop.c -o atomprop.o mv -f .deps/atomprop.Tpo .deps/atomprop.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT block_tx.lo -MD -MP -MF .deps/block_tx.Tpo -c -o block_tx.lo block_tx.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT block_tx.lo -MD -MP -MF .deps/block_tx.Tpo -c block_tx.c -o block_tx.o mv -f .deps/block_tx.Tpo .deps/block_tx.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT bondfree.lo -MD -MP -MF .deps/bondfree.Tpo -c -o bondfree.lo bondfree.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT bondfree.lo -MD -MP -MF .deps/bondfree.Tpo -c bondfree.c -o bondfree.o mv -f .deps/bondfree.Tpo .deps/bondfree.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT calcgrid.lo -MD -MP -MF .deps/calcgrid.Tpo -c -o calcgrid.lo calcgrid.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT calcgrid.lo -MD -MP -MF .deps/calcgrid.Tpo -c calcgrid.c -o calcgrid.o mv -f .deps/calcgrid.Tpo .deps/calcgrid.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT calch.lo -MD -MP -MF .deps/calch.Tpo -c -o calch.lo calch.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer 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-DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT copyrite.lo -MD -MP -MF .deps/copyrite.Tpo -c -o copyrite.lo copyrite.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT copyrite.lo -MD -MP -MF .deps/copyrite.Tpo -c copyrite.c -o copyrite.o mv -f .deps/copyrite.Tpo .deps/copyrite.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT disre.lo -MD -MP -MF .deps/disre.Tpo -c -o disre.lo disre.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT disre.lo -MD -MP -MF .deps/disre.Tpo -c disre.c -o disre.o mv -f .deps/disre.Tpo .deps/disre.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT do_fit.lo -MD -MP -MF .deps/do_fit.Tpo -c -o do_fit.lo do_fit.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT do_fit.lo -MD -MP -MF .deps/do_fit.Tpo -c do_fit.c -o do_fit.o mv -f .deps/do_fit.Tpo .deps/do_fit.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT enxio.lo -MD -MP -MF .deps/enxio.Tpo -c -o enxio.lo enxio.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT enxio.lo -MD -MP -MF .deps/enxio.Tpo -c enxio.c -o enxio.o mv -f .deps/enxio.Tpo .deps/enxio.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ewald_util.lo -MD -MP -MF .deps/ewald_util.Tpo -c -o ewald_util.lo ewald_util.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include 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--tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ffscanf.lo -MD -MP -MF .deps/ffscanf.Tpo -c -o ffscanf.lo ffscanf.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ffscanf.lo -MD -MP -MF .deps/ffscanf.Tpo -c ffscanf.c -o ffscanf.o mv -f .deps/ffscanf.Tpo .deps/ffscanf.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT filenm.lo -MD -MP -MF .deps/filenm.Tpo -c -o filenm.lo filenm.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT filenm.lo -MD -MP -MF .deps/filenm.Tpo -c filenm.c -o filenm.o mv -f .deps/filenm.Tpo .deps/filenm.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT futil.lo -MD -MP -MF .deps/futil.Tpo -c -o futil.lo futil.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT futil.lo -MD -MP -MF .deps/futil.Tpo -c futil.c -o futil.o mv -f .deps/futil.Tpo .deps/futil.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gbutil.lo -MD -MP -MF .deps/gbutil.Tpo -c -o gbutil.lo gbutil.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gbutil.lo -MD -MP -MF .deps/gbutil.Tpo -c gbutil.c -o gbutil.o mv -f .deps/gbutil.Tpo .deps/gbutil.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmxfio.lo -MD -MP -MF .deps/gmxfio.Tpo -c -o gmxfio.lo gmxfio.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmxfio.lo -MD -MP -MF .deps/gmxfio.Tpo -c gmxfio.c -o gmxfio.o mv -f .deps/gmxfio.Tpo .deps/gmxfio.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ifunc.lo -MD -MP -MF .deps/ifunc.Tpo -c -o ifunc.lo ifunc.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ifunc.lo -MD -MP -MF .deps/ifunc.Tpo -c ifunc.c -o ifunc.o mv -f .deps/ifunc.Tpo .deps/ifunc.Plo /bin/sh ../../libtool --tag=CC 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mshift.lo -MD -MP -MF .deps/mshift.Tpo -c -o mshift.lo mshift.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT mshift.lo -MD -MP -MF .deps/mshift.Tpo -c mshift.c -o mshift.o mv -f .deps/mshift.Tpo .deps/mshift.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT mvdata.lo -MD -MP -MF .deps/mvdata.Tpo -c -o mvdata.lo mvdata.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT mvdata.lo -MD -MP -MF .deps/mvdata.Tpo -c 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-c -o tcontrol.lo tcontrol.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT tcontrol.lo -MD -MP -MF .deps/tcontrol.Tpo -c tcontrol.c -o tcontrol.o mv -f .deps/tcontrol.Tpo .deps/tcontrol.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -version-info 4:0:0 -framework Accelerate -o libgmx.la -rpath /usr/local/gromacs333_single/lib 3dview.lo atomprop.lo block_tx.lo bondfree.lo calcgrid.lo calch.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mtxio.lo mshift.lo mvdata.lo mvxvf.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo stat.lo statutil.lo strdb.lo string2.lo symtab.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo xmlio.lo tcontrol.lo nonbonded/libnonbonded.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 mkdir .libs rm -fr .libs/libgmx.lax mkdir .libs/libgmx.lax rm -fr .libs/libgmx.lax/libnonbonded.a mkdir .libs/libgmx.lax/libnonbonded.a Extracting /Users/damianallis/Desktop/gromacsinstallation/gromacs-3.3.3/src/gmxlib/nonbonded/.libs/libnonbonded.a (cd .libs/libgmx.lax/libnonbonded.a && ar x /Users/damianallis/Desktop/gromacsinstallation/gromacs-3.3.3/src/gmxlib/nonbonded/.libs/libnonbonded.a) ar cru .libs/libgmx.a 3dview.o atomprop.o block_tx.o bondfree.o calcgrid.o calch.o confio.o copyrite.o disre.o do_fit.o enxio.o ewald_util.o gmx_fatal.o ffscanf.o filenm.o futil.o gbutil.o gmxfio.o ifunc.o index.o cinvsqrtdata.o invblock.o macros.o orires.o sparsematrix.o main.o maths.o matio.o mtxio.o mshift.o mvdata.o mvxvf.o names.o network.o nrama.o nrjac.o nrnb.o pargs.o pbc.o pdbio.o princ.o rando.o random.o gmx_random.o rbin.o readinp.o replace.o rmpbc.o shift_util.o sortwater.o smalloc.o stat.o statutil.o strdb.o string2.o symtab.o tpxio.o trnio.o trxio.o txtdump.o typedefs.o viewit.o wgms.o wman.o writeps.o xtcio.o xvgr.o libxdrf.o gmx_arpack.o dihres.o xmlio.o tcontrol.o .libs/libgmx.lax/libnonbonded.a/nb_free_energy.o .libs/libgmx.lax/libnonbonded.a/nb_kernel.o .libs/libgmx.lax/libnonbonded.a/nb_kernel010_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel010_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel010_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel020_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel030_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel030_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel030_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel100_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel100_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel100_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel101_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel101_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel101_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel102_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel102_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel102_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel103_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel103_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel104_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel104_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel110_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel110_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel110_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel111_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel111_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel111_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel112_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel112_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel112_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel113_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel113_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel114_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel114_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel120_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel121_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel122_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel123_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel124_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel130_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel130_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel131_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel131_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel132_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel132_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel133_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel133_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel134_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel134_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel200_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel200_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel201_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel201_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel202_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel202_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel203_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel203_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel204_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel204_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel210_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel210_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel211_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel211_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel212_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel212_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel213_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel213_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel214_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel214_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel220_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel221_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel222_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel223_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel224_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel230_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel230_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel231_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel231_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel232_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel232_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel233_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel233_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel234_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel234_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel300_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel300_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel300_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel301_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel301_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel301_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel302_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel302_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel302_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel303_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel303_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel304_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel304_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel310_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel310_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel310_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel311_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel311_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel311_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel312_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel312_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel312_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel313_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel313_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel314_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel314_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel320_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel321_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel322_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel323_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel324_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel330_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel330_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel330_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel331_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel331_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel331_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel332_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel332_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel332_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel333_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel333_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel334_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel334_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel400_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel400_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel410_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel410_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel420_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel430_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel430_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel_ia32_3dnow_test_asm.o .libs/libgmx.lax/libnonbonded.a/nb_kernel_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel_ia32_sse_test_asm.o .libs/libgmx.lax/libnonbonded.a/nonbonded.o ranlib: file: .libs/libgmx.a(xmlio.o) has no symbols ranlib .libs/libgmx.a ranlib: file: .libs/libgmx.a(xmlio.o) has no symbols rm -fr .libs/libgmx.lax creating libgmx.la (cd .libs && rm -f libgmx.la && ln -s ../libgmx.la libgmx.la) Making all in mdlib /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT calcmu.lo -MD -MP -MF .deps/calcmu.Tpo -c -o calcmu.lo calcmu.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT calcmu.lo -MD -MP -MF .deps/calcmu.Tpo -c calcmu.c -o calcmu.o mv -f .deps/calcmu.Tpo .deps/calcmu.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT calcvir.lo -MD -MP -MF .deps/calcvir.Tpo -c -o calcvir.lo calcvir.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT calcvir.lo -MD -MP -MF .deps/calcvir.Tpo -c calcvir.c -o calcvir.o mv -f .deps/calcvir.Tpo .deps/calcvir.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT constr.lo -MD -MP -MF .deps/constr.Tpo -c -o constr.lo constr.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT constr.lo -MD -MP -MF .deps/constr.Tpo -c constr.c -o constr.o mv -f .deps/constr.Tpo .deps/constr.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT coupling.lo -MD -MP -MF .deps/coupling.Tpo -c -o coupling.lo coupling.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT coupling.lo -MD -MP -MF .deps/coupling.Tpo -c coupling.c -o coupling.o mv -f .deps/coupling.Tpo .deps/coupling.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ebin.lo -MD -MP -MF .deps/ebin.Tpo -c -o ebin.lo ebin.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ebin.lo -MD -MP -MF .deps/ebin.Tpo -c ebin.c -o ebin.o mv -f .deps/ebin.Tpo .deps/ebin.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT edsam.lo -MD -MP -MF .deps/edsam.Tpo -c -o edsam.lo edsam.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT edsam.lo -MD -MP -MF .deps/edsam.Tpo -c edsam.c -o edsam.o mv -f .deps/edsam.Tpo .deps/edsam.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ewald.lo -MD -MP -MF .deps/ewald.Tpo -c -o ewald.lo ewald.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ewald.lo -MD -MP -MF .deps/ewald.Tpo -c ewald.c -o ewald.o mv -f .deps/ewald.Tpo .deps/ewald.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT force.lo -MD -MP -MF .deps/force.Tpo -c -o force.lo force.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT force.lo -MD -MP -MF .deps/force.Tpo -c force.c -o force.o mv -f .deps/force.Tpo .deps/force.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ghat.lo -MD -MP -MF .deps/ghat.Tpo -c -o ghat.lo ghat.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ghat.lo -MD -MP -MF .deps/ghat.Tpo -c ghat.c -o ghat.o mv -f .deps/ghat.Tpo .deps/ghat.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT mdatom.lo -MD -MP -MF .deps/mdatom.Tpo -c -o mdatom.lo mdatom.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT mdatom.lo -MD -MP -MF .deps/mdatom.Tpo -c mdatom.c -o mdatom.o mv -f .deps/mdatom.Tpo .deps/mdatom.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT mdebin.lo -MD -MP -MF .deps/mdebin.Tpo -c -o 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--tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT clincs.lo -MD -MP -MF .deps/clincs.Tpo -c -o clincs.lo clincs.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT clincs.lo -MD -MP -MF .deps/clincs.Tpo -c clincs.c -o clincs.o mv -f .deps/clincs.Tpo .deps/clincs.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT qmmm.lo -MD -MP -MF .deps/qmmm.Tpo -c -o qmmm.lo qmmm.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT qmmm.lo -MD -MP -MF .deps/qmmm.Tpo -c qmmm.c -o qmmm.o mv -f .deps/qmmm.Tpo .deps/qmmm.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_fft.lo -MD -MP -MF .deps/gmx_fft.Tpo -c -o gmx_fft.lo gmx_fft.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_fft.lo -MD -MP -MF .deps/gmx_fft.Tpo -c gmx_fft.c -o gmx_fft.o mv -f .deps/gmx_fft.Tpo .deps/gmx_fft.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_parallel_3dfft.lo -MD -MP -MF .deps/gmx_parallel_3dfft.Tpo -c -o gmx_parallel_3dfft.lo gmx_parallel_3dfft.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_parallel_3dfft.lo -MD -MP -MF .deps/gmx_parallel_3dfft.Tpo -c gmx_parallel_3dfft.c -o gmx_parallel_3dfft.o mv -f .deps/gmx_parallel_3dfft.Tpo .deps/gmx_parallel_3dfft.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT qm_gaussian.lo -MD -MP -MF .deps/qm_gaussian.Tpo -c -o qm_gaussian.lo qm_gaussian.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT qm_gaussian.lo -MD -MP -MF .deps/qm_gaussian.Tpo -c qm_gaussian.c -o qm_gaussian.o mv -f .deps/qm_gaussian.Tpo .deps/qm_gaussian.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_fft_fftw3.lo -MD -MP -MF .deps/gmx_fft_fftw3.Tpo -c -o gmx_fft_fftw3.lo gmx_fft_fftw3.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_fft_fftw3.lo -MD -MP -MF .deps/gmx_fft_fftw3.Tpo -c gmx_fft_fftw3.c -o gmx_fft_fftw3.o mv -f .deps/gmx_fft_fftw3.Tpo .deps/gmx_fft_fftw3.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -version-info 4:0:0 -framework Accelerate -o libmd.la -rpath /usr/local/gromacs333_single/lib calcmu.lo calcvir.lo constr.lo coupling.lo ebin.lo edsam.lo ewald.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo ns.lo nsb.lo nsgrid.lo pme.lo pppm.lo fftgrid.lo pull.lo pullinit.lo pullio.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo splittop.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo qm_gaussian.lo gmx_fft_fftw3.lo -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 mkdir .libs ar cru .libs/libmd.a calcmu.o calcvir.o constr.o coupling.o ebin.o edsam.o ewald.o force.o ghat.o init.o mdatom.o mdebin.o minimize.o ns.o nsb.o nsgrid.o pme.o pppm.o fftgrid.o pull.o pullinit.o pullio.o pullutil.o rf_util.o shakef.o sim_util.o splittop.o tables.o tgroup.o update.o vcm.o vsite.o wnblist.o csettle.o clincs.o qmmm.o gmx_fft.o gmx_parallel_3dfft.o qm_gaussian.o gmx_fft_fftw3.o ranlib: file: .libs/libmd.a(gmx_parallel_3dfft.o) has no symbols ranlib .libs/libmd.a ranlib: file: .libs/libmd.a(gmx_parallel_3dfft.o) has no symbols creating libmd.la (cd .libs && rm -f libmd.la && ln -s ../libmd.la libmd.la) Making all in kernel cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT topio.o -MD -MP -MF .deps/topio.Tpo -c -o topio.o topio.c mv -f .deps/topio.Tpo .deps/topio.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT toppush.o -MD -MP -MF .deps/toppush.Tpo -c -o toppush.o toppush.c mv -f .deps/toppush.Tpo .deps/toppush.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT topcat.o -MD -MP -MF .deps/topcat.Tpo -c -o topcat.o topcat.c mv -f .deps/topcat.Tpo .deps/topcat.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT topshake.o -MD -MP -MF .deps/topshake.Tpo -c -o topshake.o topshake.c mv -f .deps/topshake.Tpo .deps/topshake.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT convparm.o -MD -MP -MF .deps/convparm.Tpo -c -o convparm.o convparm.c mv -f .deps/convparm.Tpo .deps/convparm.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT tomorse.o -MD -MP -MF .deps/tomorse.Tpo -c -o tomorse.o tomorse.c mv -f .deps/tomorse.Tpo .deps/tomorse.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT sorting.o -MD -MP -MF .deps/sorting.Tpo -c -o sorting.o sorting.c mv -f .deps/sorting.Tpo .deps/sorting.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT splitter.o -MD -MP -MF .deps/splitter.Tpo -c -o splitter.o splitter.c mv -f .deps/splitter.Tpo .deps/splitter.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT vsite_parm.o -MD -MP -MF .deps/vsite_parm.Tpo -c -o vsite_parm.o vsite_parm.c mv -f .deps/vsite_parm.Tpo .deps/vsite_parm.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT readir.o -MD -MP -MF .deps/readir.Tpo -c -o readir.o readir.c mv -f .deps/readir.Tpo .deps/readir.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT add_par.o -MD -MP -MF .deps/add_par.Tpo -c -o add_par.o add_par.c mv -f .deps/add_par.Tpo .deps/add_par.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT topexcl.o -MD -MP -MF .deps/topexcl.Tpo -c -o topexcl.o topexcl.c mv -f .deps/topexcl.Tpo .deps/topexcl.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT toputil.o -MD -MP -MF .deps/toputil.Tpo -c -o toputil.o toputil.c mv -f .deps/toputil.Tpo .deps/toputil.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT topdirs.o -MD -MP -MF .deps/topdirs.Tpo -c -o topdirs.o topdirs.c mv -f .deps/topdirs.Tpo .deps/topdirs.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT grompp.o -MD -MP -MF .deps/grompp.Tpo -c -o grompp.o grompp.c mv -f .deps/grompp.Tpo .deps/grompp.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT compute_io.o -MD -MP -MF .deps/compute_io.Tpo -c -o compute_io.o compute_io.c mv -f .deps/compute_io.Tpo .deps/compute_io.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o grompp topio.o toppush.o topcat.o topshake.o convparm.o tomorse.o sorting.o splitter.o vsite_parm.o readir.o add_par.o topexcl.o toputil.o topdirs.o grompp.o compute_io.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 mkdir .libs cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o grompp topio.o toppush.o topcat.o topshake.o convparm.o tomorse.o sorting.o splitter.o vsite_parm.o readir.o add_par.o topexcl.o toputil.o topdirs.o grompp.o compute_io.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT glaasje.o -MD -MP -MF .deps/glaasje.Tpo -c -o glaasje.o glaasje.c mv -f .deps/glaasje.Tpo .deps/glaasje.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gctio.o -MD -MP -MF .deps/gctio.Tpo -c -o gctio.o gctio.c mv -f .deps/gctio.Tpo .deps/gctio.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT init_sh.o -MD -MP -MF .deps/init_sh.Tpo -c -o init_sh.o init_sh.c mv -f .deps/init_sh.Tpo .deps/init_sh.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ionize.o -MD -MP -MF .deps/ionize.Tpo -c -o ionize.o ionize.c mv -f .deps/ionize.Tpo .deps/ionize.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT do_gct.o -MD -MP -MF .deps/do_gct.Tpo -c -o do_gct.o do_gct.c mv -f .deps/do_gct.Tpo .deps/do_gct.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT relax_sh.o -MD -MP -MF .deps/relax_sh.Tpo -c -o relax_sh.o relax_sh.c mv -f .deps/relax_sh.Tpo .deps/relax_sh.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT repl_ex.o -MD -MP -MF .deps/repl_ex.Tpo -c -o repl_ex.o repl_ex.c mv -f .deps/repl_ex.Tpo .deps/repl_ex.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT xutils.o -MD -MP -MF .deps/xutils.Tpo -c -o xutils.o xutils.c mv -f .deps/xutils.Tpo .deps/xutils.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT md.o -MD -MP -MF .deps/md.Tpo -c -o md.o md.c mv -f .deps/md.Tpo .deps/md.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT mdrun.o -MD -MP -MF .deps/mdrun.Tpo -c -o mdrun.o mdrun.c mv -f .deps/mdrun.Tpo .deps/mdrun.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT genalg.o -MD -MP -MF .deps/genalg.Tpo -c -o genalg.o genalg.c mv -f .deps/genalg.Tpo .deps/genalg.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o mdrun glaasje.o gctio.o init_sh.o ionize.o do_gct.o relax_sh.o repl_ex.o xutils.o compute_io.o md.o mdrun.o genalg.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o mdrun glaasje.o gctio.o init_sh.o ionize.o do_gct.o relax_sh.o repl_ex.o xutils.o compute_io.o md.o mdrun.o genalg.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT tpbconv.o -MD -MP -MF .deps/tpbconv.Tpo -c -o tpbconv.o tpbconv.c mv -f .deps/tpbconv.Tpo .deps/tpbconv.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o tpbconv readir.o toputil.o topdirs.o add_par.o topexcl.o tpbconv.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o tpbconv readir.o toputil.o topdirs.o add_par.o topexcl.o tpbconv.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT hizzie.o -MD -MP -MF .deps/hizzie.Tpo -c -o hizzie.o hizzie.c mv -f .deps/hizzie.Tpo .deps/hizzie.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT xlate.o -MD -MP -MF .deps/xlate.Tpo -c -o xlate.o xlate.c mv -f .deps/xlate.Tpo .deps/xlate.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT specbond.o -MD -MP -MF .deps/specbond.Tpo -c -o specbond.o specbond.c mv -f .deps/specbond.Tpo .deps/specbond.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ter_db.o -MD -MP -MF .deps/ter_db.Tpo -c -o ter_db.o ter_db.c mv -f .deps/ter_db.Tpo .deps/ter_db.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT h_db.o -MD -MP -MF .deps/h_db.Tpo -c -o h_db.o h_db.c mv -f .deps/h_db.Tpo .deps/h_db.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT genhydro.o -MD -MP -MF .deps/genhydro.Tpo -c -o genhydro.o genhydro.c mv -f .deps/genhydro.Tpo .deps/genhydro.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT pdb2top.o -MD -MP -MF .deps/pdb2top.Tpo -c -o pdb2top.o pdb2top.c mv -f .deps/pdb2top.Tpo .deps/pdb2top.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gen_ad.o -MD -MP -MF .deps/gen_ad.Tpo -c -o gen_ad.o gen_ad.c mv -f .deps/gen_ad.Tpo .deps/gen_ad.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gen_vsite.o -MD -MP -MF .deps/gen_vsite.Tpo -c -o gen_vsite.o gen_vsite.c mv -f .deps/gen_vsite.Tpo .deps/gen_vsite.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT pgutil.o -MD -MP -MF .deps/pgutil.Tpo -c -o pgutil.o pgutil.c mv -f .deps/pgutil.Tpo .deps/pgutil.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT resall.o -MD -MP -MF .deps/resall.Tpo -c -o resall.o resall.c mv -f .deps/resall.Tpo .deps/resall.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT hackblock.o -MD -MP -MF .deps/hackblock.Tpo -c -o hackblock.o hackblock.c mv -f .deps/hackblock.Tpo .deps/hackblock.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT pdb2gmx.o -MD -MP -MF .deps/pdb2gmx.Tpo -c -o pdb2gmx.o pdb2gmx.c mv -f .deps/pdb2gmx.Tpo .deps/pdb2gmx.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o pdb2gmx hizzie.o xlate.o specbond.o ter_db.o h_db.o genhydro.o pdb2top.o gen_ad.o gen_vsite.o pgutil.o resall.o hackblock.o add_par.o topexcl.o toputil.o topdirs.o pdb2gmx.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o pdb2gmx hizzie.o xlate.o specbond.o ter_db.o h_db.o genhydro.o pdb2top.o gen_ad.o gen_vsite.o pgutil.o resall.o hackblock.o add_par.o topexcl.o toputil.o topdirs.o pdb2gmx.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT protonate.o -MD -MP -MF .deps/protonate.Tpo -c -o protonate.o protonate.c mv -f .deps/protonate.Tpo .deps/protonate.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o protonate hackblock.o ter_db.o h_db.o genhydro.o pgutil.o resall.o add_par.o topexcl.o toputil.o topdirs.o protonate.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o protonate hackblock.o ter_db.o h_db.o genhydro.o pgutil.o resall.o add_par.o topexcl.o toputil.o topdirs.o protonate.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT luck.o -MD -MP -MF .deps/luck.Tpo -c -o luck.o luck.c mv -f .deps/luck.Tpo .deps/luck.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o luck luck.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o luck luck.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmxdump.o -MD -MP -MF .deps/gmxdump.Tpo -c -o gmxdump.o gmxdump.c mv -f .deps/gmxdump.Tpo .deps/gmxdump.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o gmxdump gmxdump.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o gmxdump gmxdump.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmxcheck.o -MD -MP -MF .deps/gmxcheck.Tpo -c -o gmxcheck.o gmxcheck.c mv -f .deps/gmxcheck.Tpo .deps/gmxcheck.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT tpbcmp.o -MD -MP -MF .deps/tpbcmp.Tpo -c -o tpbcmp.o tpbcmp.c mv -f .deps/tpbcmp.Tpo .deps/tpbcmp.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o gmxcheck gmxcheck.o tpbcmp.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o gmxcheck gmxcheck.o tpbcmp.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nm2type.o -MD -MP -MF .deps/nm2type.Tpo -c -o nm2type.o nm2type.c mv -f .deps/nm2type.Tpo .deps/nm2type.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT x2top.o -MD -MP -MF .deps/x2top.Tpo -c -o x2top.o x2top.c mv -f .deps/x2top.Tpo .deps/x2top.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o x2top toppush.o nm2type.o pdb2top.o gen_ad.o gen_vsite.o pgutil.o resall.o hackblock.o add_par.o topexcl.o toputil.o topdirs.o x2top.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o x2top toppush.o nm2type.o pdb2top.o gen_ad.o gen_vsite.o pgutil.o resall.o hackblock.o add_par.o topexcl.o toputil.o topdirs.o x2top.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ffscan.o -MD -MP -MF .deps/ffscan.Tpo -c -o ffscan.o ffscan.c mv -f .deps/ffscan.Tpo .deps/ffscan.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o ffscan ffscan.o glaasje.o gctio.o init_sh.o ionize.o md.o genalg.o do_gct.o relax_sh.o repl_ex.o xutils.o compute_io.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o ffscan ffscan.o glaasje.o gctio.o init_sh.o ionize.o md.o genalg.o do_gct.o relax_sh.o repl_ex.o xutils.o compute_io.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib Making all in tools /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT autocorr.lo -MD -MP -MF .deps/autocorr.Tpo -c -o autocorr.lo autocorr.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT autocorr.lo -MD -MP -MF .deps/autocorr.Tpo -c autocorr.c -o autocorr.o mv -f .deps/autocorr.Tpo .deps/autocorr.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT expfit.lo -MD -MP -MF .deps/expfit.Tpo -c -o expfit.lo expfit.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT expfit.lo -MD -MP -MF .deps/expfit.Tpo -c expfit.c -o expfit.o mv -f .deps/expfit.Tpo .deps/expfit.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT polynomials.lo -MD -MP -MF .deps/polynomials.Tpo -c -o polynomials.lo polynomials.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT polynomials.lo -MD -MP -MF .deps/polynomials.Tpo -c polynomials.c -o polynomials.o mv -f .deps/polynomials.Tpo .deps/polynomials.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT levenmar.lo -MD -MP -MF .deps/levenmar.Tpo -c -o levenmar.lo levenmar.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall 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gmx_editconf.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_editconf.lo -MD -MP -MF .deps/gmx_editconf.Tpo -c gmx_editconf.c -o gmx_editconf.o mv -f .deps/gmx_editconf.Tpo .deps/gmx_editconf.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_genbox.lo -MD -MP -MF .deps/gmx_genbox.Tpo -c -o gmx_genbox.lo gmx_genbox.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_genbox.lo -MD -MP -MF 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-finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_genconf.lo -MD -MP -MF .deps/gmx_genconf.Tpo -c -o gmx_genconf.lo gmx_genconf.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_genconf.lo -MD -MP -MF .deps/gmx_genconf.Tpo -c gmx_genconf.c -o gmx_genconf.o mv -f .deps/gmx_genconf.Tpo .deps/gmx_genconf.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_genpr.lo -MD -MP -MF .deps/gmx_genpr.Tpo -c -o gmx_genpr.lo gmx_genpr.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_genpr.lo -MD -MP -MF .deps/gmx_genpr.Tpo -c gmx_genpr.c -o gmx_genpr.o mv -f .deps/gmx_genpr.Tpo .deps/gmx_genpr.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_eneconv.lo -MD -MP -MF .deps/gmx_eneconv.Tpo -c -o gmx_eneconv.lo gmx_eneconv.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_eneconv.lo -MD -MP -MF .deps/gmx_eneconv.Tpo -c gmx_eneconv.c -o gmx_eneconv.o mv -f .deps/gmx_eneconv.Tpo .deps/gmx_eneconv.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_wheel.lo -MD -MP -MF .deps/gmx_wheel.Tpo -c -o gmx_wheel.lo gmx_wheel.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT gmx_wheel.lo -MD -MP -MF .deps/gmx_wheel.Tpo -c gmx_wheel.c -o gmx_wheel.o mv -f .deps/gmx_wheel.Tpo .deps/gmx_wheel.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT addconf.lo -MD -MP -MF .deps/addconf.Tpo -c -o addconf.lo addconf.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT addconf.lo -MD -MP -MF .deps/addconf.Tpo -c addconf.c -o addconf.o mv -f .deps/addconf.Tpo .deps/addconf.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT calcpot.lo -MD -MP -MF .deps/calcpot.Tpo -c -o calcpot.lo calcpot.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT calcpot.lo -MD -MP -MF .deps/calcpot.Tpo -c calcpot.c -o calcpot.o mv -f .deps/calcpot.Tpo .deps/calcpot.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT edittop.lo -MD -MP -MF .deps/edittop.Tpo -c -o edittop.lo edittop.c cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT edittop.lo -MD -MP -MF .deps/edittop.Tpo -c edittop.c -o edittop.o mv -f .deps/edittop.Tpo .deps/edittop.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -version-info 4:0:0 -framework Accelerate -o libgmxana.la -rpath /usr/local/gromacs333_single/lib autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spatial.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 mkdir .libs ar cru .libs/libgmxana.a autocorr.o expfit.o polynomials.o levenmar.o anadih.o pp2shift.o dlist.o eigio.o lsq.o cmat.o eigensolver.o nsc.o hxprops.o fitahx.o gmx_analyze.o gmx_anaeig.o gmx_angle.o gmx_bond.o gmx_bundle.o gmx_chi.o gmx_cluster.o gmx_confrms.o gmx_covar.o gmx_density.o gmx_densmap.o gmx_dih.o gmx_dielectric.o gmx_kinetics.o gmx_dipoles.o gmx_disre.o gmx_dist.o gmx_dyndom.o gmx_enemat.o gmx_energy.o gmx_lie.o gmx_filter.o gmx_gyrate.o gmx_h2order.o gmx_hbond.o gmx_helix.o gmx_mindist.o gmx_msd.o gmx_morph.o gmx_nmeig.o gmx_nmens.o gmx_order.o gmx_potential.o gmx_rama.o gmx_rdf.o gmx_rms.o gmx_rmsdist.o gmx_rmsf.o gmx_rotacf.o gmx_saltbr.o gmx_sas.o gmx_sdf.o gmx_sgangle.o gmx_sorient.o gmx_spatial.o gmx_tcaf.o gmx_traj.o gmx_velacc.o gmx_clustsize.o gmx_mdmat.o gmx_wham.o correl.o gmx_sham.o gmx_nmtraj.o gmx_trjconv.o gmx_trjcat.o gmx_trjorder.o gmx_xpm2ps.o gmx_editconf.o gmx_genbox.o gmx_genion.o gmx_genconf.o gmx_genpr.o gmx_eneconv.o gmx_wheel.o addconf.o calcpot.o edittop.o ranlib .libs/libgmxana.a creating libgmxana.la (cd .libs && rm -f libgmxana.la && ln -s ../libgmxana.la libgmxana.la) cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT average.o -MD -MP -MF .deps/average.Tpo -c -o average.o average.c mv -f .deps/average.Tpo .deps/average.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o average average.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o average average.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT do_dssp.o -MD -MP -MF .deps/do_dssp.Tpo -c -o do_dssp.o do_dssp.c mv -f .deps/do_dssp.Tpo .deps/do_dssp.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o do_dssp do_dssp.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o do_dssp do_dssp.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT editconf.o -MD -MP -MF .deps/editconf.Tpo -c -o editconf.o editconf.c mv -f .deps/editconf.Tpo .deps/editconf.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o editconf editconf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o editconf editconf.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT eneconv.o -MD -MP -MF .deps/eneconv.Tpo -c -o eneconv.o eneconv.c mv -f .deps/eneconv.Tpo .deps/eneconv.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o eneconv eneconv.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o eneconv eneconv.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT genbox.o -MD -MP -MF .deps/genbox.Tpo -c -o genbox.o genbox.c mv -f .deps/genbox.Tpo .deps/genbox.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o genbox genbox.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o genbox genbox.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT genconf.o -MD -MP -MF .deps/genconf.Tpo -c -o genconf.o genconf.c mv -f .deps/genconf.Tpo .deps/genconf.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o genconf genconf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o genconf genconf.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT genpr.o -MD -MP -MF .deps/genpr.Tpo -c -o genpr.o genpr.c mv -f .deps/genpr.Tpo .deps/genpr.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o genpr genpr.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o genpr genpr.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_nmtraj.o -MD -MP -MF .deps/g_nmtraj.Tpo -c -o g_nmtraj.o g_nmtraj.c mv -f .deps/g_nmtraj.Tpo .deps/g_nmtraj.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_nmtraj g_nmtraj.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_nmtraj g_nmtraj.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT make_ndx.o -MD -MP -MF .deps/make_ndx.Tpo -c -o make_ndx.o make_ndx.c mv -f .deps/make_ndx.Tpo .deps/make_ndx.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o make_ndx make_ndx.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o make_ndx make_ndx.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT mk_angndx.o -MD -MP -MF .deps/mk_angndx.Tpo -c -o mk_angndx.o mk_angndx.c mv -f .deps/mk_angndx.Tpo .deps/mk_angndx.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o mk_angndx mk_angndx.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o mk_angndx mk_angndx.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT trjcat.o -MD -MP -MF .deps/trjcat.Tpo -c -o trjcat.o trjcat.c mv -f .deps/trjcat.Tpo .deps/trjcat.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o trjcat trjcat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o trjcat trjcat.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT trjconv.o -MD -MP -MF .deps/trjconv.Tpo -c -o trjconv.o trjconv.c mv -f .deps/trjconv.Tpo .deps/trjconv.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o trjconv trjconv.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o trjconv trjconv.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT trjorder.o -MD -MP -MF .deps/trjorder.Tpo -c -o trjorder.o trjorder.c mv -f .deps/trjorder.Tpo .deps/trjorder.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o trjorder trjorder.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o trjorder trjorder.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT wheel.o -MD -MP -MF .deps/wheel.Tpo -c -o wheel.o wheel.c mv -f .deps/wheel.Tpo .deps/wheel.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o wheel wheel.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o wheel wheel.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT xpm2ps.o -MD -MP -MF .deps/xpm2ps.Tpo -c -o xpm2ps.o xpm2ps.c mv -f .deps/xpm2ps.Tpo .deps/xpm2ps.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o xpm2ps xpm2ps.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o xpm2ps xpm2ps.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT genion.o -MD -MP -MF .deps/genion.Tpo -c -o genion.o genion.c mv -f .deps/genion.Tpo .deps/genion.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o genion genion.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o genion genion.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT anadock.o -MD -MP -MF .deps/anadock.Tpo -c -o anadock.o anadock.c mv -f .deps/anadock.Tpo .deps/anadock.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o anadock anadock.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o anadock anadock.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT make_edi.o -MD -MP -MF .deps/make_edi.Tpo -c -o make_edi.o make_edi.c mv -f .deps/make_edi.Tpo .deps/make_edi.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o make_edi make_edi.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o make_edi make_edi.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_analyze.o -MD -MP -MF .deps/g_analyze.Tpo -c -o g_analyze.o g_analyze.c mv -f .deps/g_analyze.Tpo .deps/g_analyze.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_analyze g_analyze.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_analyze g_analyze.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_anaeig.o -MD -MP -MF .deps/g_anaeig.Tpo -c -o g_anaeig.o g_anaeig.c mv -f .deps/g_anaeig.Tpo .deps/g_anaeig.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_anaeig g_anaeig.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_anaeig g_anaeig.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_angle.o -MD -MP -MF .deps/g_angle.Tpo -c -o g_angle.o g_angle.c mv -f .deps/g_angle.Tpo .deps/g_angle.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_angle g_angle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_angle g_angle.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_bond.o -MD -MP -MF .deps/g_bond.Tpo -c -o g_bond.o g_bond.c mv -f .deps/g_bond.Tpo .deps/g_bond.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_bond g_bond.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_bond g_bond.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_bundle.o -MD -MP -MF .deps/g_bundle.Tpo -c -o g_bundle.o g_bundle.c mv -f .deps/g_bundle.Tpo .deps/g_bundle.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_bundle g_bundle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_bundle g_bundle.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_chi.o -MD -MP -MF .deps/g_chi.Tpo -c -o g_chi.o g_chi.c mv -f .deps/g_chi.Tpo .deps/g_chi.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_chi g_chi.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_chi g_chi.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_cluster.o -MD -MP -MF .deps/g_cluster.Tpo -c -o g_cluster.o g_cluster.c mv -f .deps/g_cluster.Tpo .deps/g_cluster.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_cluster g_cluster.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_cluster g_cluster.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_confrms.o -MD -MP -MF .deps/g_confrms.Tpo -c -o g_confrms.o g_confrms.c mv -f .deps/g_confrms.Tpo .deps/g_confrms.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_confrms g_confrms.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_confrms g_confrms.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_covar.o -MD -MP -MF .deps/g_covar.Tpo -c -o g_covar.o g_covar.c mv -f .deps/g_covar.Tpo .deps/g_covar.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_covar g_covar.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_covar g_covar.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_density.o -MD -MP -MF .deps/g_density.Tpo -c -o g_density.o g_density.c mv -f .deps/g_density.Tpo .deps/g_density.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_density g_density.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_density g_density.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_densmap.o -MD -MP -MF .deps/g_densmap.Tpo -c -o g_densmap.o g_densmap.c mv -f .deps/g_densmap.Tpo .deps/g_densmap.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_densmap g_densmap.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_densmap g_densmap.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_dih.o -MD -MP -MF .deps/g_dih.Tpo -c -o g_dih.o g_dih.c mv -f .deps/g_dih.Tpo .deps/g_dih.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_dih g_dih.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_dih g_dih.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_dielectric.o -MD -MP -MF .deps/g_dielectric.Tpo -c -o g_dielectric.o g_dielectric.c mv -f .deps/g_dielectric.Tpo .deps/g_dielectric.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_dielectric g_dielectric.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_dielectric g_dielectric.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_dipoles.o -MD -MP -MF .deps/g_dipoles.Tpo -c -o g_dipoles.o g_dipoles.c mv -f .deps/g_dipoles.Tpo .deps/g_dipoles.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_dipoles g_dipoles.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_dipoles g_dipoles.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_disre.o -MD -MP -MF .deps/g_disre.Tpo -c -o g_disre.o g_disre.c mv -f .deps/g_disre.Tpo .deps/g_disre.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_disre g_disre.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_disre g_disre.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_dist.o -MD -MP -MF .deps/g_dist.Tpo -c -o g_dist.o g_dist.c mv -f .deps/g_dist.Tpo .deps/g_dist.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_dist g_dist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_dist g_dist.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_dyndom.o -MD -MP -MF .deps/g_dyndom.Tpo -c -o g_dyndom.o g_dyndom.c mv -f .deps/g_dyndom.Tpo .deps/g_dyndom.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_dyndom g_dyndom.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_dyndom g_dyndom.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_enemat.o -MD -MP -MF .deps/g_enemat.Tpo -c -o g_enemat.o g_enemat.c mv -f .deps/g_enemat.Tpo .deps/g_enemat.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_enemat g_enemat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_enemat g_enemat.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_energy.o -MD -MP -MF .deps/g_energy.Tpo -c -o g_energy.o g_energy.c mv -f .deps/g_energy.Tpo .deps/g_energy.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_energy g_energy.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_energy g_energy.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_lie.o -MD -MP -MF .deps/g_lie.Tpo -c -o g_lie.o g_lie.c mv -f .deps/g_lie.Tpo .deps/g_lie.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_lie g_lie.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_lie g_lie.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_filter.o -MD -MP -MF .deps/g_filter.Tpo -c -o g_filter.o g_filter.c mv -f .deps/g_filter.Tpo .deps/g_filter.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_filter g_filter.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_filter g_filter.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_gyrate.o -MD -MP -MF .deps/g_gyrate.Tpo -c -o g_gyrate.o g_gyrate.c mv -f .deps/g_gyrate.Tpo .deps/g_gyrate.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_gyrate g_gyrate.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_gyrate g_gyrate.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_h2order.o -MD -MP -MF .deps/g_h2order.Tpo -c -o g_h2order.o g_h2order.c mv -f .deps/g_h2order.Tpo .deps/g_h2order.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_h2order g_h2order.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_h2order g_h2order.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_hbond.o -MD -MP -MF .deps/g_hbond.Tpo -c -o g_hbond.o g_hbond.c mv -f .deps/g_hbond.Tpo .deps/g_hbond.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_hbond g_hbond.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_hbond g_hbond.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_helix.o -MD -MP -MF .deps/g_helix.Tpo -c -o g_helix.o g_helix.c mv -f .deps/g_helix.Tpo .deps/g_helix.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_helix g_helix.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_helix g_helix.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_mindist.o -MD -MP -MF .deps/g_mindist.Tpo -c -o g_mindist.o g_mindist.c mv -f .deps/g_mindist.Tpo .deps/g_mindist.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_mindist g_mindist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_mindist g_mindist.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_msd.o -MD -MP -MF .deps/g_msd.Tpo -c -o g_msd.o g_msd.c mv -f .deps/g_msd.Tpo .deps/g_msd.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_msd g_msd.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_msd g_msd.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_morph.o -MD -MP -MF .deps/g_morph.Tpo -c -o g_morph.o g_morph.c mv -f .deps/g_morph.Tpo .deps/g_morph.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_morph g_morph.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_morph g_morph.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_nmeig.o -MD -MP -MF .deps/g_nmeig.Tpo -c -o g_nmeig.o g_nmeig.c mv -f .deps/g_nmeig.Tpo .deps/g_nmeig.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_nmeig g_nmeig.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_nmeig g_nmeig.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_nmens.o -MD -MP -MF .deps/g_nmens.Tpo -c -o g_nmens.o g_nmens.c mv -f .deps/g_nmens.Tpo .deps/g_nmens.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_nmens g_nmens.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_nmens g_nmens.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_order.o -MD -MP -MF .deps/g_order.Tpo -c -o g_order.o g_order.c mv -f .deps/g_order.Tpo .deps/g_order.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_order g_order.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_order g_order.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_potential.o -MD -MP -MF .deps/g_potential.Tpo -c -o g_potential.o g_potential.c mv -f .deps/g_potential.Tpo .deps/g_potential.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_potential g_potential.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_potential g_potential.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_rama.o -MD -MP -MF .deps/g_rama.Tpo -c -o g_rama.o g_rama.c mv -f .deps/g_rama.Tpo .deps/g_rama.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rama g_rama.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rama g_rama.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_rdf.o -MD -MP -MF .deps/g_rdf.Tpo -c -o g_rdf.o g_rdf.c mv -f .deps/g_rdf.Tpo .deps/g_rdf.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rdf g_rdf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rdf g_rdf.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_rms.o -MD -MP -MF .deps/g_rms.Tpo -c -o g_rms.o g_rms.c mv -f .deps/g_rms.Tpo .deps/g_rms.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rms g_rms.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rms g_rms.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_rmsdist.o -MD -MP -MF .deps/g_rmsdist.Tpo -c -o g_rmsdist.o g_rmsdist.c mv -f .deps/g_rmsdist.Tpo .deps/g_rmsdist.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rmsdist g_rmsdist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rmsdist g_rmsdist.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_rmsf.o -MD -MP -MF .deps/g_rmsf.Tpo -c -o g_rmsf.o g_rmsf.c mv -f .deps/g_rmsf.Tpo .deps/g_rmsf.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rmsf g_rmsf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rmsf g_rmsf.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_rotacf.o -MD -MP -MF .deps/g_rotacf.Tpo -c -o g_rotacf.o g_rotacf.c mv -f .deps/g_rotacf.Tpo .deps/g_rotacf.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rotacf g_rotacf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_rotacf g_rotacf.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_saltbr.o -MD -MP -MF .deps/g_saltbr.Tpo -c -o g_saltbr.o g_saltbr.c mv -f .deps/g_saltbr.Tpo .deps/g_saltbr.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_saltbr g_saltbr.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_saltbr g_saltbr.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_sas.o -MD -MP -MF .deps/g_sas.Tpo -c -o g_sas.o g_sas.c mv -f .deps/g_sas.Tpo .deps/g_sas.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_sas g_sas.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_sas g_sas.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_sgangle.o -MD -MP -MF .deps/g_sgangle.Tpo -c -o g_sgangle.o g_sgangle.c mv -f .deps/g_sgangle.Tpo .deps/g_sgangle.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_sgangle g_sgangle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_sgangle g_sgangle.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_sham.o -MD -MP -MF .deps/g_sham.Tpo -c -o g_sham.o g_sham.c mv -f .deps/g_sham.Tpo .deps/g_sham.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_sham g_sham.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_sham g_sham.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_sorient.o -MD -MP -MF .deps/g_sorient.Tpo -c -o g_sorient.o g_sorient.c mv -f .deps/g_sorient.Tpo .deps/g_sorient.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_sorient g_sorient.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_sorient g_sorient.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_sdf.o -MD -MP -MF .deps/g_sdf.Tpo -c -o g_sdf.o g_sdf.c mv -f .deps/g_sdf.Tpo .deps/g_sdf.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_sdf g_sdf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_sdf g_sdf.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_spatial.o -MD -MP -MF .deps/g_spatial.Tpo -c -o g_spatial.o g_spatial.c mv -f .deps/g_spatial.Tpo .deps/g_spatial.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_spatial g_spatial.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_spatial g_spatial.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_tcaf.o -MD -MP -MF .deps/g_tcaf.Tpo -c -o g_tcaf.o g_tcaf.c mv -f .deps/g_tcaf.Tpo .deps/g_tcaf.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_tcaf g_tcaf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_tcaf g_tcaf.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_traj.o -MD -MP -MF .deps/g_traj.Tpo -c -o g_traj.o g_traj.c mv -f .deps/g_traj.Tpo .deps/g_traj.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_traj g_traj.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_traj g_traj.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_velacc.o -MD -MP -MF .deps/g_velacc.Tpo -c -o g_velacc.o g_velacc.c mv -f .deps/g_velacc.Tpo .deps/g_velacc.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_velacc g_velacc.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_velacc g_velacc.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_clustsize.o -MD -MP -MF .deps/g_clustsize.Tpo -c -o g_clustsize.o g_clustsize.c mv -f .deps/g_clustsize.Tpo .deps/g_clustsize.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_clustsize g_clustsize.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_clustsize g_clustsize.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_mdmat.o -MD -MP -MF .deps/g_mdmat.Tpo -c -o g_mdmat.o g_mdmat.c mv -f .deps/g_mdmat.Tpo .deps/g_mdmat.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_mdmat g_mdmat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_mdmat g_mdmat.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_wham.o -MD -MP -MF .deps/g_wham.Tpo -c -o g_wham.o g_wham.c mv -f .deps/g_wham.Tpo .deps/g_wham.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_wham g_wham.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_wham g_wham.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT g_kinetics.o -MD -MP -MF .deps/g_kinetics.Tpo -c -o g_kinetics.o g_kinetics.c mv -f .deps/g_kinetics.Tpo .deps/g_kinetics.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_kinetics g_kinetics.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o g_kinetics g_kinetics.o ./.libs/libgmxana.a -L/usr/X11/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib Making all in ngmx cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT ngmx.o -MD -MP -MF .deps/ngmx.Tpo -c -o ngmx.o ngmx.c mv -f .deps/ngmx.Tpo .deps/ngmx.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT xutil.o -MD -MP -MF .deps/xutil.Tpo -c -o xutil.o xutil.c mv -f .deps/xutil.Tpo .deps/xutil.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT xmb.o -MD -MP -MF .deps/xmb.Tpo -c -o xmb.o xmb.c mv -f .deps/xmb.Tpo .deps/xmb.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT x11.o -MD -MP -MF .deps/x11.Tpo -c -o x11.o x11.c mv -f .deps/x11.Tpo .deps/x11.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT xdlghi.o -MD -MP -MF .deps/xdlghi.Tpo -c -o xdlghi.o xdlghi.c mv -f .deps/xdlghi.Tpo .deps/xdlghi.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT fgrid.o -MD -MP -MF .deps/fgrid.Tpo -c -o fgrid.o fgrid.c mv -f .deps/fgrid.Tpo .deps/fgrid.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT xdlgitem.o -MD -MP -MF .deps/xdlgitem.Tpo -c -o xdlgitem.o xdlgitem.c mv -f .deps/xdlgitem.Tpo .deps/xdlgitem.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT popup.o -MD -MP -MF .deps/popup.Tpo -c -o popup.o popup.c mv -f .deps/popup.Tpo .deps/popup.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT pulldown.o -MD -MP -MF .deps/pulldown.Tpo -c -o pulldown.o pulldown.c mv -f .deps/pulldown.Tpo .deps/pulldown.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT xdlg.o -MD -MP -MF .deps/xdlg.Tpo -c -o xdlg.o xdlg.c mv -f .deps/xdlg.Tpo .deps/xdlg.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT manager.o -MD -MP -MF .deps/manager.Tpo -c -o manager.o manager.c mv -f .deps/manager.Tpo .deps/manager.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT buttons.o -MD -MP -MF .deps/buttons.Tpo -c -o buttons.o buttons.c mv -f .deps/buttons.Tpo .deps/buttons.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nmol.o -MD -MP -MF .deps/nmol.Tpo -c -o nmol.o nmol.c mv -f .deps/nmol.Tpo .deps/nmol.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT nleg.o -MD -MP -MF .deps/nleg.Tpo -c -o nleg.o nleg.c mv -f .deps/nleg.Tpo .deps/nleg.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT dialogs.o -MD -MP -MF .deps/dialogs.Tpo -c -o dialogs.o dialogs.c mv -f .deps/dialogs.Tpo .deps/dialogs.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT logo.o -MD -MP -MF .deps/logo.Tpo -c -o logo.o logo.c mv -f .deps/logo.Tpo .deps/logo.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT filter.o -MD -MP -MF .deps/filter.Tpo -c -o filter.o filter.c mv -f .deps/filter.Tpo .deps/filter.Po cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT molps.o -MD -MP -MF .deps/molps.Tpo -c -o molps.o molps.c mv -f .deps/molps.Tpo .deps/molps.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 mkdir .libs cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT xrama.o -MD -MP -MF .deps/xrama.Tpo -c -o xrama.o xrama.c mv -f .deps/xrama.Tpo .deps/xrama.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/X11/include -I../../include -DGMXLIBDIR=\"/usr/local/gromacs333_single/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -MT highway.o -MD -MP -MF .deps/highway.Tpo -c -o highway.o highway.c mv -f .deps/highway.Tpo .deps/highway.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -framework Accelerate -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/.libs/libmd.a -L/usr/X11/lib ../gmxlib/.libs/libgmx.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib Making all in contrib make[3]: Nothing to be done for `all'. make[3]: Nothing to be done for `all-am'. Making all in admin make[1]: Nothing to be done for `all'. Making all in scripts cat ./GMXRC.in | sed 's,@bindir\@,/usr/local/gromacs333_single/bin,' > GMXRC cat ./GMXRC.csh.in | sed 's,@libdir\@,/usr/local/gromacs333_single/lib,' | \ sed 's,@bindir\@,/usr/local/gromacs333_single/bin,' | \ sed 's,@datadir\@,/usr/local/gromacs333_single/share,' | \ sed 's,@mandir\@,/usr/local/gromacs333_single/share/man,' > GMXRC.csh cat ./GMXRC.bash.in | sed 's,@libdir\@,/usr/local/gromacs333_single/lib,' | \ sed 's,@bindir\@,/usr/local/gromacs333_single/bin,' | \ sed 's,@datadir\@,/usr/local/gromacs333_single/share,' | \ sed 's,@mandir\@,/usr/local/gromacs333_single/share/man,' > GMXRC.bash cat ./GMXRC.zsh.in | sed 's,@libdir\@,/usr/local/gromacs333_single/lib,' | \ sed 's,@bindir\@,/usr/local/gromacs333_single/bin,' | \ sed 's,@datadir\@,/usr/local/gromacs333_single/share,' | \ sed 's,@mandir\@,/usr/local/gromacs333_single/share/man,' > GMXRC.zsh Making all in share Making all in top make[2]: Nothing to be done for `all'. Making all in tutor Making all in nmr1 make[3]: Nothing to be done for `all'. Making all in nmr2 make[3]: Nothing to be done for `all'. Making all in speptide make[3]: Nothing to be done for `all'. Making all in water make[3]: Nothing to be done for `all'. Making all in gmxdemo make[3]: Nothing to be done for `all'. Making all in methanol make[3]: Nothing to be done for `all'. Making all in mixed make[3]: Nothing to be done for `all'. make[3]: Nothing to be done for `all-am'. Making all in template cat ./Template.mak | \ sed 's,@LDFLAGS\@,-L/usr/local/gromacs333_single/lib -framework Accelerate,' | \ sed 's,@LIBS\@,-lmd -lgmx -L/usr/X11/lib -R/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 ,' | \ sed 's,@CFLAGS\@,-O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -I/usr/X11/include -I/usr/local/gromacs333_single/include/gromacs,' | \ sed 's,@CC\@,cc,' | \ sed 's,@host\@,i386-apple-darwin9.2.2,' >Makefile.i386-apple-darwin9.2.2 Making all in html Making all in . make[3]: Nothing to be done for `all-am'. Making all in images make[3]: Nothing to be done for `all'. Making all in online make[3]: Nothing to be done for `all'. make[2]: Nothing to be done for `all-am'. Making all in man Making all in man1 make[2]: Nothing to be done for `all'. make[2]: Nothing to be done for `all-am'. make[1]: Nothing to be done for `all-am'.