checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking how to create a ustar tar archive... gnutar ============================================================================ == Configuring Open MPI ============================================================================ *** Checking versions checking Open MPI version... 1.3 checking Open MPI release date... Jan 19, 2009 checking Open MPI Subversion repository version... r20295 checking Open Run-Time Environment version... 1.3 checking Open Run-Time Environment release date... Jan 19, 2009 checking Open Run-Time Environment Subversion repository version... r20295 checking Open Portable Access Layer version... 1.3 checking Open Portable Access Layer release date... Jan 19, 2009 checking Open Portable Access Layer Subversion repository version... r20295 *** Initialization, setup configure: builddir: /opt/openmpi-1.3 configure: srcdir: /opt/openmpi-1.3 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu installing to directory "/" *** Configuration options checking whether to run code coverage... no checking whether to compile with branch probabilities... no checking whether to debug memory usage... no checking whether to profile memory usage... no checking if want developer-level compiler pickyness... no checking if want developer-level debugging code... no checking if want sparse process groups... no checking if want Fortran 77 bindings... yes checking if want Fortran 90 bindings... yes checking desired Fortran 90 bindings "size"... small checking whether to enable PMPI... yes checking if want C++ bindings... yes checking if want MPI::SEEK_SET support... yes checking if want to enable weak symbol support... yes checking if want run-time MPI parameter checking... runtime checking if want to install OMPI header files... no checking if want pretty-print stacktrace... yes checking if peruse support is required... no checking max supported array dimension in F90 MPI bindings... 4 checking if pty support should be enabled... yes checking if user wants dlopen support... yes checking if heterogeneous support should be enabled... no checking if want trace file debugging... no checking if want full RTE support... yes checking if want fault tolerance... Disabled fault tolerance checking if want IPv6 support... yes (if underlying system supports it) checking if want orterun "--prefix" behavior to be enabled by default... no checking for package/brand string... Open MPI root@terahertz-desktop Distribution checking for ident string... 1.3 ============================================================================ == Compiler and preprocessor tests ============================================================================ *** C compiler and preprocessor checking for style of include used by make... GNU checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for the C compiler vendor... gnu checking for ANSI C header files... yes checking if gcc supports -finline-functions... yes checking if gcc supports -fno-strict-aliasing... yes configure: WARNING: -fno-strict-aliasing has been added to CFLAGS checking if gcc supports __builtin_expect... yes checking if gcc supports __builtin_prefetch... yes checking for C optimization flags... -O3 -DNDEBUG -finline-functions -fno-strict-aliasing checking for Interix environment... no checking for C ident string support... #ident checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for long long... yes checking for long double... yes checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking for mode_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of long double... 16 checking size of float... 4 checking size of double... 8 checking size of void *... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking alignment of char... 1 checking alignment of short... 2 checking alignment of wchar_t... 4 checking alignment of int... 4 checking alignment of long... 8 checking alignment of long long... 8 checking alignment of float... 4 checking alignment of double... 8 checking alignment of long double... 16 checking alignment of void *... 8 checking for C bool type... no checking for inline... __inline__ checking for C/C++ restrict keyword... __restrict checking for weak symbol support... yes *** C++ compiler and preprocessor checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for the C++ compiler vendor... gnu checking if C++ compiler works... yes checking if g++ supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if want C++ exception handling... no checking if C and C++ are link compatible... yes checking for C++ template_repository_directory... not used checking for C++ compiler template parameters... none needed checking if g++ supports __builtin_expect... yes checking if g++ supports __builtin_prefetch... yes checking if g++ supports const_cast<> properly... yes checking for C++ optimization flags... -O3 -DNDEBUG -finline-functions checking for C++ ident string support... #ident checking size of bool... 1 checking alignment of bool... 1 checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(visibility)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes *** Assembler checking dependency style of gcc... gcc3 checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking for fgrep... /bin/grep -F checking if need to remove -g from CCASFLAGS... no checking whether to enable smp locks... yes checking if .proc/endp is needed... no checking directive for setting text section... .text checking directive for exporting symbols... .globl checking for objdump... objdump checking if .note.GNU-stack is needed... yes checking suffix for labels... : checking prefix for global symbol labels... checking prefix for lsym labels... .L checking prefix for function in .type... @ checking if .size is needed... yes checking if .align directive takes logarithmic value... no checking if gcc supports GCC inline assembly... yes checking if gcc supports DEC inline assembly... no checking if gcc supports XLC inline assembly... no checking if g++ supports GCC inline assembly... yes checking if g++ supports DEC inline assembly... no checking if g++ supports XLC inline assembly... no checking for assembly format... default-.text-.globl-:--.L-@-1-0-1-1-1 checking for asssembly architecture... AMD64 checking for perl... perl checking for pre-built assembly file... yes (atomic-amd64-linux.s) checking for atomic assembly filename... atomic-amd64-linux.s *** Fortran 77 compiler checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if Fortran 77 compiler works... yes checking gfortran external symbol convention... single underscore checking if C and Fortran 77 are link compatible... yes checking to see if F77 compiler likes the C++ exception flags... skipped (no C++ exceptions flags) checking if Fortran 77 compiler supports LOGICAL... yes checking size of Fortran 77 LOGICAL... 4 checking for C type corresponding to LOGICAL... int checking alignment of Fortran LOGICAL... 4 checking if Fortran 77 compiler supports LOGICAL*1... yes checking size of Fortran 77 LOGICAL*1... 1 checking for C type corresponding to LOGICAL*1... char checking alignment of Fortran LOGICAL*1... 1 checking if Fortran 77 compiler supports LOGICAL*2... yes checking size of Fortran 77 LOGICAL*2... 2 checking for C type corresponding to LOGICAL*2... short checking alignment of Fortran LOGICAL*2... 2 checking if Fortran 77 compiler supports LOGICAL*4... yes checking size of Fortran 77 LOGICAL*4... 4 checking for C type corresponding to LOGICAL*4... int checking alignment of Fortran LOGICAL*4... 4 checking if Fortran 77 compiler supports LOGICAL*8... yes checking size of Fortran 77 LOGICAL*8... 8 checking for C type corresponding to LOGICAL*8... long long checking alignment of Fortran LOGICAL*8... 8 checking if Fortran 77 compiler supports INTEGER... yes checking size of Fortran 77 INTEGER... 4 checking for C type corresponding to INTEGER... int checking alignment of Fortran INTEGER... 4 checking if Fortran 77 compiler supports INTEGER*1... yes checking size of Fortran 77 INTEGER*1... 1 checking for C type corresponding to INTEGER*1... char checking alignment of Fortran INTEGER*1... 1 checking if Fortran 77 compiler supports INTEGER*2... yes checking size of Fortran 77 INTEGER*2... 2 checking for C type corresponding to INTEGER*2... short checking alignment of Fortran INTEGER*2... 2 checking if Fortran 77 compiler supports INTEGER*4... yes checking size of Fortran 77 INTEGER*4... 4 checking for C type corresponding to INTEGER*4... int checking alignment of Fortran INTEGER*4... 4 checking if Fortran 77 compiler supports INTEGER*8... yes checking size of Fortran 77 INTEGER*8... 8 checking for C type corresponding to INTEGER*8... long long checking alignment of Fortran INTEGER*8... 8 checking if Fortran 77 compiler supports INTEGER*16... yes checking size of Fortran 77 INTEGER*16... 16 checking for C type corresponding to INTEGER*16... not found configure: WARNING: *** Did not find corresponding C type checking if Fortran 77 compiler supports REAL... yes checking size of Fortran 77 REAL... 4 checking for C type corresponding to REAL... float checking alignment of Fortran REAL... 4 checking if Fortran 77 compiler supports REAL*2... no checking if Fortran 77 compiler supports REAL*4... yes checking size of Fortran 77 REAL*4... 4 checking for C type corresponding to REAL*4... float checking alignment of Fortran REAL*4... 4 checking if Fortran 77 compiler supports REAL*8... yes checking size of Fortran 77 REAL*8... 8 checking for C type corresponding to REAL*8... double checking alignment of Fortran REAL*8... 8 checking if Fortran 77 compiler supports REAL*16... no checking if REAL*16 matches bit representation in C... no (no REAL*16) configure: WARNING: MPI_REAL16 and MPI_COMPLEX32 support have been disabled checking if Fortran 77 compiler supports DOUBLE PRECISION... yes checking size of Fortran 77 DOUBLE PRECISION... 8 checking for C type corresponding to DOUBLE PRECISION... double checking alignment of Fortran DOUBLE PRECISION... 8 checking if Fortran 77 compiler supports COMPLEX... yes checking size of Fortran 77 COMPLEX... 8 checking alignment of Fortran COMPLEX... 4 checking if Fortran 77 compiler supports COMPLEX*8... yes checking size of Fortran 77 COMPLEX*8... 8 checking alignment of Fortran COMPLEX*8... 4 checking if Fortran 77 compiler supports COMPLEX*16... yes checking size of Fortran 77 COMPLEX*16... 16 checking alignment of Fortran COMPLEX*16... 8 checking if Fortran 77 compiler supports COMPLEX*32... no checking for max Fortran MPI handle index... ( 0x7fffffff < 2147483647 ? 0x7fffffff : 2147483647 ) checking FORTRAN value for .TRUE. logical type... 1 checking for correct handling of FORTRAN logical arrays... yes *** Fortran 90/95 compiler checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if Fortran compiler works... yes checking whether gfortran and gfortran compilers are compatible... yes checking for extra arguments to build a shard library... none needed checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .f90 files... none checking to see if F90 compiler likes the C++ exception flags... skipped (no C++ exceptions flags) checking for Fortran 90 compiler module include flag... -I checking if Fortran 90 compiler supports LOGICAL... yes checking size of Fortran 90 LOGICAL... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports LOGICAL*1... yes checking size of Fortran 90 LOGICAL*1... 1 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports LOGICAL*2... yes checking size of Fortran 90 LOGICAL*2... 2 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports LOGICAL*4... yes checking size of Fortran 90 LOGICAL*4... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports LOGICAL*8... yes checking size of Fortran 90 LOGICAL*8... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER... yes checking size of Fortran 90 INTEGER... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER*1... yes checking size of Fortran 90 INTEGER*1... 1 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER*2... yes checking size of Fortran 90 INTEGER*2... 2 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER*4... yes checking size of Fortran 90 INTEGER*4... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER*8... yes checking size of Fortran 90 INTEGER*8... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER*16... yes checking size of Fortran 90 INTEGER*16... 16 configure: WARNING: *** Corresponding Fortran 77 type (INTEGER*16) not supported configure: WARNING: *** Skipping Fortran 90 type (INTEGER*16) checking if Fortran 90 compiler supports REAL... yes checking size of Fortran 90 REAL... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports REAL*2... no checking if Fortran 90 compiler supports REAL*4... yes checking size of Fortran 90 REAL*4... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports REAL*8... yes checking size of Fortran 90 REAL*8... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports REAL*16... no checking if Fortran 90 compiler supports DOUBLE PRECISION... yes checking size of Fortran 90 DOUBLE PRECISION... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports COMPLEX... yes checking size of Fortran 90 COMPLEX... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports COMPLEX*8... yes checking size of Fortran 90 COMPLEX*8... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports COMPLEX*16... yes checking size of Fortran 90 COMPLEX*16... 16 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports COMPLEX*32... no checking if Fortran 90 compiler supports DOUBLE COMPLEX... yes checking size of Fortran 90 DOUBLE COMPLEX... 16 checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9))... 4 checking Fortran 90 kind of MPI_ADDRESS_KIND (selected_int_kind(18))... 8 checking Fortran 90 kind of MPI_OFFSET_KIND (selected_int_kind(18))... (cached) 8 ============================================================================ == Header file tests ============================================================================ checking alloca.h usability... yes checking alloca.h presence... yes checking for alloca.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking for inttypes.h... (cached) yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking libutil.h usability... no checking libutil.h presence... no checking for libutil.h... no checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking pty.h usability... yes checking pty.h presence... yes checking for pty.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stropts.h usability... yes checking stropts.h presence... yes checking for stropts.h... yes checking sys/fcntl.h usability... yes checking sys/fcntl.h presence... yes checking for sys/fcntl.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/queue.h usability... yes checking sys/queue.h presence... yes checking for sys/queue.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/stat.h... (cached) yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/tree.h usability... no checking sys/tree.h presence... no checking for sys/tree.h... no checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking net/uio.h usability... no checking net/uio.h presence... no checking for net/uio.h... no checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking ulimit.h usability... yes checking ulimit.h presence... yes checking for ulimit.h... yes checking for unistd.h... (cached) yes checking util.h usability... no checking util.h presence... no checking for util.h... no checking utmp.h usability... yes checking utmp.h presence... yes checking for utmp.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking sys/sysctl.h usability... yes checking sys/sysctl.h presence... yes checking for sys/sysctl.h... yes checking crt_externs.h usability... no checking crt_externs.h presence... no checking for crt_externs.h... no checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking ioLib.h usability... no checking ioLib.h presence... no checking for ioLib.h... no checking sockLib.h usability... no checking sockLib.h presence... no checking for sockLib.h... no checking hostLib.h usability... no checking hostLib.h presence... no checking for hostLib.h... no checking shlwapi.h usability... no checking shlwapi.h presence... no checking for shlwapi.h... no checking sys/synch.h usability... no checking sys/synch.h presence... no checking for sys/synch.h... no checking for net/if.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking if works... yes ============================================================================ == Type tests ============================================================================ checking size of pid_t... 4 checking for socklen_t... yes checking for struct sockaddr_in... yes checking for struct sockaddr_in6... yes checking for struct sockaddr_storage... yes checking whether AF_UNSPEC is declared... yes checking whether PF_UNSPEC is declared... yes checking whether AF_INET6 is declared... yes checking whether PF_INET6 is declared... yes checking if SA_RESTART defined in signal.h... yes checking for struct sockaddr.sa_len... no checking for struct dirent.d_type... yes checking for siginfo_t.si_fd... yes checking for siginfo_t.si_band... yes ============================================================================ == Library and Function tests ============================================================================ checking for openpty in -lutil... yes checking for gethostbyname in -lnsl... yes checking for socket in -lsocket... no checking if we need -lrt for sched_yield... no checking for sched_yield... yes checking if we need -lgen for dirname... no checking for dirname... yes checking if we need -lm for ceil... yes checking for ceil... yes checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for openpty... yes checking for isatty... yes checking for getpwuid... yes checking for fork... yes checking for waitpid... yes checking for execve... yes checking for pipe... yes checking for ptsname... yes checking for setsid... yes checking for mmap... yes checking for mallopt... yes checking for tcgetpgrp... yes checking for posix_memalign... yes checking for strsignal... yes checking for sysconf... yes checking for syslog... yes checking for regcmp... no checking for regexec... yes checking for regfree... yes checking for _NSGetEnviron... no checking for socketpair... yes checking for strncpy_s... no checking for _strdup... no checking for usleep... yes checking for mkfifo... yes checking for htonl define... no checking for htonl... yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking whether __func__ is declared... yes ============================================================================ == System-specific tests ============================================================================ checking checking for type of MPI_Offset... long long checking checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG checking for _SC_NPROCESSORS_ONLN... yes checking whether byte ordering is bigendian... no checking for broken qsort... no checking if word-sized integers must be word-size aligned... no checking if C compiler and POSIX threads work as is... no checking if C++ compiler and POSIX threads work as is... no checking if F77 compiler and POSIX threads work as is... no checking if C compiler and POSIX threads work with -Kthread... no checking if C compiler and POSIX threads work with -kthread... no checking if C compiler and POSIX threads work with -pthread... yes checking if C++ compiler and POSIX threads work with -Kthread... no checking if C++ compiler and POSIX threads work with -kthread... no checking if C++ compiler and POSIX threads work with -pthread... yes checking if F77 compiler and POSIX threads work with -Kthread... no checking if F77 compiler and POSIX threads work with -kthread... no checking if F77 compiler and POSIX threads work with -pthread... yes checking for PTHREAD_MUTEX_ERRORCHECK_NP... yes checking for PTHREAD_MUTEX_ERRORCHECK... yes checking for working POSIX threads package... yes checking if C compiler and Solaris threads work... no checking if C++ compiler and Solaris threads work... no checking if F77 compiler and Solaris threads work... no checking for working Solaris threads package... no checking for type of thread support... posix checking if threads have different pids (pthreads on linux)... no checking if want MPI thread support... no checking if want asynchronous progress thread support... no checking if want fault tolerance thread... Disabled (fault tolerance disabled --without-ft) checking whether ln -s works... yes checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/grep -E checking dependency style of gcc... (cached) gcc3 checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for flavor of ps to use... ps -A -o fname,pid,user checking if build filesystem is case sensitive... yes checking if configuring for case sensitive filesystem... yes checking whether RLIMIT_NPROC is declared... yes ============================================================================ == Modular Component Architecture (MCA) setup ============================================================================ checking for subdir args... '--prefix=/' checking for bison... bison -y checking for gcc... gcc checking whether we are using the GNU Objective C compiler... no checking whether gcc accepts -g... no checking dependency style of gcc... gcc3 checking which components should be disabled... checking which components should be direct-linked into the library... checking which components should be run-time loadable... all checking which components should be static... none checking for projects containing MCA frameworks... opal, orte, ompi *** Configuring MCA for opal checking for frameworks for opal... backtrace, carto, crs, installdirs, maffinity, memchecker, memcpy, memory, paffinity, timer +++ Configuring MCA framework backtrace checking for no configure components in framework backtrace... checking for m4 configure components in framework backtrace... execinfo, printstack, darwin, none --- MCA component backtrace:execinfo (m4 configuration macro) checking for MCA component backtrace:execinfo compile mode... static checking for execinfo.h... (cached) yes checking if we need -lexecinfo for backtrace... no checking for backtrace... yes checking if MCA component backtrace:execinfo can compile... yes --- MCA component backtrace:printstack (m4 configuration macro) checking for MCA component backtrace:printstack compile mode... static checking if MCA component backtrace:printstack can compile... no --- MCA component backtrace:darwin (m4 configuration macro) checking for MCA component backtrace:darwin compile mode... static checking if MCA component backtrace:darwin can compile... no --- MCA component backtrace:none (m4 configuration macro) checking for MCA component backtrace:none compile mode... static checking if MCA component backtrace:none can compile... no +++ Configuring MCA framework carto checking for no configure components in framework carto... auto_detect, file checking for m4 configure components in framework carto... --- MCA component carto:auto_detect (no configuration) checking for MCA component carto:auto_detect compile mode... dso checking if MCA component carto:auto_detect can compile... yes --- MCA component carto:file (no configuration) checking for MCA component carto:file compile mode... dso checking if MCA component carto:file can compile... yes +++ Configuring MCA framework crs checking for no configure components in framework crs... none checking for m4 configure components in framework crs... blcr, self --- MCA component crs:none (no configuration) checking for MCA component crs:none compile mode... dso checking if MCA component crs:none can compile... yes --- MCA component crs:blcr (m4 configuration macro) checking for MCA component crs:blcr compile mode... dso checking if MCA component crs:blcr can compile... no --- MCA component crs:self (m4 configuration macro) checking for MCA component crs:self compile mode... dso checking if MCA component crs:self can compile... no +++ Configuring MCA framework installdirs checking for no configure components in framework installdirs... checking for m4 configure components in framework installdirs... env, config --- MCA component installdirs:env (m4 configuration macro) checking for MCA component installdirs:env compile mode... static checking if MCA component installdirs:env can compile... yes --- MCA component installdirs:config (m4 configuration macro) checking for MCA component installdirs:config compile mode... static checking if MCA component installdirs:config can compile... yes +++ Configuring MCA framework maffinity checking for no configure components in framework maffinity... first_use checking for m4 configure components in framework maffinity... libnuma --- MCA component maffinity:first_use (no configuration) checking for MCA component maffinity:first_use compile mode... dso checking if MCA component maffinity:first_use can compile... yes --- MCA component maffinity:libnuma (m4 configuration macro) checking for MCA component maffinity:libnuma compile mode... dso checking numa.h usability... no checking numa.h presence... no checking for numa.h... no checking if MCA component maffinity:libnuma can compile... no +++ Pre-configuring the framework memchecker checking if --enable-memchecker was specified... no (adding "memchecker" to --enable-mca-no-build list) +++ Configuring MCA framework memchecker checking for no configure components in framework memchecker... checking for m4 configure components in framework memchecker... valgrind --- MCA component memchecker:valgrind (m4 configuration macro) checking for MCA component memchecker:valgrind compile mode... static checking if MCA component memchecker:valgrind can compile... no +++ Configuring MCA framework memcpy checking for no configure components in framework memcpy... checking for m4 configure components in framework memcpy... +++ Configuring MCA framework memory checking for no configure components in framework memory... checking for m4 configure components in framework memory... ptmalloc2, malloc_solaris, mallopt --- MCA component memory:ptmalloc2 (m4 configuration macro) checking for MCA component memory:ptmalloc2 compile mode... static checking if ptmalloc2 should be part of libopen-pal... no checking for malloc.h... (cached) yes checking whether __malloc_initialize_hook is declared... yes checking whether sbrk is declared... yes checking syscall.h usability... yes checking syscall.h presence... yes checking for syscall.h... yes checking for syscall... yes checking for __munmap... no checking for __mmap... no checking for dlsym in -ldl... yes checking for dlsym... yes checking if MCA component memory:ptmalloc2 can compile... yes --- MCA component memory:malloc_solaris (m4 configuration macro) checking for MCA component memory:malloc_solaris compile mode... static checking if MCA component memory:malloc_solaris can compile... no --- MCA component memory:mallopt (m4 configuration macro) checking for MCA component memory:mallopt compile mode... static checking if MCA component memory:mallopt can compile... no +++ Configuring MCA framework paffinity checking for no configure components in framework paffinity... checking for m4 configure components in framework paffinity... linux, solaris, windows, darwin, posix --- MCA component paffinity:linux (m4 configuration macro) checking for MCA component paffinity:linux compile mode... dso checking for syscall... (cached) yes checking sys/syscall.h usability... yes checking sys/syscall.h presence... yes checking for sys/syscall.h... yes checking for unistd.h... (cached) yes checking for __NR_sched_setaffinity... yes checking for __NR_sched_getaffinity... yes checking for PLPA building mode... included checking if want PLPA maintainer support... disabled checking for PLPA config prefix... opal/mca/paffinity/linux/plpa checking for PLPA symbol prefix... opal_paffinity_linux_plpa_ checking whether to build PLPA executables... no checking for PLPA version... 1.2rc2 checking if MCA component paffinity:linux can compile... yes --- MCA component paffinity:solaris (m4 configuration macro) checking for MCA component paffinity:solaris compile mode... dso checking sys/procset.h usability... no checking sys/procset.h presence... no checking for sys/procset.h... no checking if MCA component paffinity:solaris can compile... no --- MCA component paffinity:windows (m4 configuration macro) checking for MCA component paffinity:windows compile mode... dso checking for working GetProcessAffinityMask... no checking if MCA component paffinity:windows can compile... no --- MCA component paffinity:darwin (m4 configuration macro) checking for MCA component paffinity:darwin compile mode... dso checking if MCA component paffinity:darwin can compile... no --- MCA component paffinity:posix (m4 configuration macro) checking for MCA component paffinity:posix compile mode... dso checking if MCA component paffinity:posix can compile... no +++ Configuring MCA framework timer checking for no configure components in framework timer... checking for m4 configure components in framework timer... catamount, aix, altix, darwin, solaris, windows, linux --- MCA component timer:catamount (m4 configuration macro) checking for MCA component timer:catamount compile mode... static checking catamount/dclock.h usability... no checking catamount/dclock.h presence... no checking for catamount/dclock.h... no checking if MCA component timer:catamount can compile... no --- MCA component timer:aix (m4 configuration macro) checking for MCA component timer:aix compile mode... static checking for time_base_to_time... no checking if MCA component timer:aix can compile... no --- MCA component timer:altix (m4 configuration macro) checking for MCA component timer:altix compile mode... static checking sn/mmtimer.h usability... no checking sn/mmtimer.h presence... no checking for sn/mmtimer.h... no checking if MCA component timer:altix can compile... no --- MCA component timer:darwin (m4 configuration macro) checking for MCA component timer:darwin compile mode... static checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for mach_absolute_time... no checking if MCA component timer:darwin can compile... no --- MCA component timer:solaris (m4 configuration macro) checking for MCA component timer:solaris compile mode... static checking for gethrtime... no checking if MCA component timer:solaris can compile... no --- MCA component timer:windows (m4 configuration macro) checking for MCA component timer:windows compile mode... static checking if MCA component timer:windows can compile... no --- MCA component timer:linux (m4 configuration macro) checking for MCA component timer:linux compile mode... static checking if MCA component timer:linux can compile... yes *** Configuring MCA for orte checking for frameworks for orte... errmgr, ess, filem, grpcomm, iof, notifier, odls, oob, plm, ras, rmaps, rml, routed, snapc +++ Configuring MCA framework errmgr checking for no configure components in framework errmgr... default checking for m4 configure components in framework errmgr... --- MCA component errmgr:default (no configuration) checking for MCA component errmgr:default compile mode... dso checking if MCA component errmgr:default can compile... yes +++ Configuring MCA framework ess checking for no configure components in framework ess... checking for m4 configure components in framework ess... portals_utcp, cnos, alps, env, hnp, lsf, singleton, slurm, tool --- MCA component ess:portals_utcp (m4 configuration macro) checking for MCA component ess:portals_utcp compile mode... dso checking for PtlGetRank... no checking if MCA component ess:portals_utcp can compile... no --- MCA component ess:cnos (m4 configuration macro) checking for MCA component ess:cnos compile mode... dso checking for cnos_get_rank... no checking if MCA component ess:cnos can compile... no --- MCA component ess:alps (m4 configuration macro) checking for MCA component ess:alps compile mode... dso checking if MCA component ess:alps can compile... no --- MCA component ess:env (m4 configuration macro) checking for MCA component ess:env compile mode... dso checking if MCA component ess:env can compile... yes --- MCA component ess:hnp (m4 configuration macro) checking for MCA component ess:hnp compile mode... dso checking if MCA component ess:hnp can compile... yes --- MCA component ess:lsf (m4 configuration macro) checking for MCA component ess:lsf compile mode... dso checking for LSF dir... compiler default checking for LSF library dir... linker default checking lsf/lsbatch.h usability... no checking lsf/lsbatch.h presence... no checking for lsf/lsbatch.h... no checking if MCA component ess:lsf can compile... no --- MCA component ess:singleton (m4 configuration macro) checking for MCA component ess:singleton compile mode... dso checking if MCA component ess:singleton can compile... yes --- MCA component ess:slurm (m4 configuration macro) checking for MCA component ess:slurm compile mode... dso checking for fork... (cached) yes checking for execve... (cached) yes checking for setpgid... yes checking if MCA component ess:slurm can compile... yes --- MCA component ess:tool (m4 configuration macro) checking for MCA component ess:tool compile mode... dso checking if MCA component ess:tool can compile... yes +++ Configuring MCA framework filem checking for no configure components in framework filem... rsh checking for m4 configure components in framework filem... --- MCA component filem:rsh (no configuration) checking for MCA component filem:rsh compile mode... dso checking if MCA component filem:rsh can compile... yes +++ Configuring MCA framework grpcomm checking for no configure components in framework grpcomm... checking for m4 configure components in framework grpcomm... cnos, bad, basic --- MCA component grpcomm:cnos (m4 configuration macro) checking for MCA component grpcomm:cnos compile mode... dso checking for cnos_barrier... no checking if MCA component grpcomm:cnos can compile... no --- MCA component grpcomm:bad (m4 configuration macro) checking for MCA component grpcomm:bad compile mode... dso checking if MCA component grpcomm:bad can compile... yes --- MCA component grpcomm:basic (m4 configuration macro) checking for MCA component grpcomm:basic compile mode... dso checking if MCA component grpcomm:basic can compile... yes +++ Configuring MCA framework iof checking for no configure components in framework iof... hnp, orted, tool checking for m4 configure components in framework iof... --- MCA component iof:hnp (no configuration) checking for MCA component iof:hnp compile mode... dso checking if MCA component iof:hnp can compile... yes --- MCA component iof:orted (no configuration) checking for MCA component iof:orted compile mode... dso checking if MCA component iof:orted can compile... yes --- MCA component iof:tool (no configuration) checking for MCA component iof:tool compile mode... dso checking if MCA component iof:tool can compile... yes +++ Configuring MCA framework notifier checking for no configure components in framework notifier... checking for m4 configure components in framework notifier... syslog --- MCA component notifier:syslog (m4 configuration macro) checking for MCA component notifier:syslog compile mode... dso checking if MCA component notifier:syslog can compile... yes +++ Configuring MCA framework odls checking for no configure components in framework odls... checking for m4 configure components in framework odls... default --- MCA component odls:default (m4 configuration macro) checking for MCA component odls:default compile mode... dso checking for fork... (cached) yes checking if MCA component odls:default can compile... yes +++ Configuring MCA framework oob checking for no configure components in framework oob... checking for m4 configure components in framework oob... tcp --- MCA component oob:tcp (m4 configuration macro) checking for MCA component oob:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component oob:tcp can compile... yes +++ Configuring MCA framework plm checking for no configure components in framework plm... checking for m4 configure components in framework plm... alps, lsf, rsh, slurm, tm, xgrid --- MCA component plm:alps (m4 configuration macro) checking for MCA component plm:alps compile mode... dso checking if MCA component plm:alps can compile... no --- MCA component plm:lsf (m4 configuration macro) checking for MCA component plm:lsf compile mode... dso checking for LSF dir... compiler default checking for LSF library dir... linker default checking lsf/lsbatch.h usability... no checking lsf/lsbatch.h presence... no checking for lsf/lsbatch.h... no checking if MCA component plm:lsf can compile... no --- MCA component plm:rsh (m4 configuration macro) checking for MCA component plm:rsh compile mode... dso checking for fork... (cached) yes checking if MCA component plm:rsh can compile... yes --- MCA component plm:slurm (m4 configuration macro) checking for MCA component plm:slurm compile mode... dso checking for fork... (cached) yes checking for execve... (cached) yes checking for setpgid... (cached) yes checking if MCA component plm:slurm can compile... yes --- MCA component plm:tm (m4 configuration macro) checking for MCA component plm:tm compile mode... dso checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component plm:tm can compile... no --- MCA component plm:xgrid (m4 configuration macro) checking for MCA component plm:xgrid compile mode... dso checking if C and Objective C are link compatible... no checking if MCA component plm:xgrid can compile... no +++ Configuring MCA framework ras checking for no configure components in framework ras... checking for m4 configure components in framework ras... alps, gridengine, loadleveler, lsf, slurm, tm --- MCA component ras:alps (m4 configuration macro) checking for MCA component ras:alps compile mode... dso checking if MCA component ras:alps can compile... no --- MCA component ras:gridengine (m4 configuration macro) checking for MCA component ras:gridengine compile mode... dso checking if user requested SGE build... not specified; checking environment checking for qrsh... no checking for SGE_ROOT environment variable... not found checking if MCA component ras:gridengine can compile... no --- MCA component ras:loadleveler (m4 configuration macro) checking for MCA component ras:loadleveler compile mode... dso checking llapi.h usability... no checking llapi.h presence... no checking for llapi.h... no checking if MCA component ras:loadleveler can compile... no --- MCA component ras:lsf (m4 configuration macro) checking for MCA component ras:lsf compile mode... dso checking for LSF dir... compiler default checking for LSF library dir... linker default checking lsf/lsbatch.h usability... no checking lsf/lsbatch.h presence... no checking for lsf/lsbatch.h... no checking if MCA component ras:lsf can compile... no --- MCA component ras:slurm (m4 configuration macro) checking for MCA component ras:slurm compile mode... dso checking for fork... (cached) yes checking for execve... (cached) yes checking for setpgid... (cached) yes checking if MCA component ras:slurm can compile... yes --- MCA component ras:tm (m4 configuration macro) checking for MCA component ras:tm compile mode... dso checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component ras:tm can compile... no +++ Configuring MCA framework rmaps checking for no configure components in framework rmaps... rank_file, round_robin, seq checking for m4 configure components in framework rmaps... --- MCA component rmaps:rank_file (no configuration) checking for MCA component rmaps:rank_file compile mode... dso checking if MCA component rmaps:rank_file can compile... yes --- MCA component rmaps:round_robin (no configuration) checking for MCA component rmaps:round_robin compile mode... dso checking if MCA component rmaps:round_robin can compile... yes --- MCA component rmaps:seq (no configuration) checking for MCA component rmaps:seq compile mode... dso checking if MCA component rmaps:seq can compile... yes +++ Configuring MCA framework rml checking for no configure components in framework rml... oob checking for m4 configure components in framework rml... ftrm --- MCA component rml:oob (no configuration) checking for MCA component rml:oob compile mode... dso checking if MCA component rml:oob can compile... yes --- MCA component rml:ftrm (m4 configuration macro) checking for MCA component rml:ftrm compile mode... dso checking if MCA component rml:ftrm can compile... no +++ Configuring MCA framework routed checking for no configure components in framework routed... binomial, direct, linear checking for m4 configure components in framework routed... --- MCA component routed:binomial (no configuration) checking for MCA component routed:binomial compile mode... dso checking if MCA component routed:binomial can compile... yes --- MCA component routed:direct (no configuration) checking for MCA component routed:direct compile mode... dso checking if MCA component routed:direct can compile... yes --- MCA component routed:linear (no configuration) checking for MCA component routed:linear compile mode... dso checking if MCA component routed:linear can compile... yes +++ Configuring MCA framework snapc checking for no configure components in framework snapc... checking for m4 configure components in framework snapc... full --- MCA component snapc:full (m4 configuration macro) checking for MCA component snapc:full compile mode... dso checking if MCA component snapc:full can compile... no *** Configuring MCA for ompi checking for frameworks for ompi... allocator, bml, btl, coll, common, crcp, dpm, io, mpool, mtl, osc, pml, pubsub, rcache, topo +++ Configuring MCA framework allocator checking for no configure components in framework allocator... basic, bucket checking for m4 configure components in framework allocator... --- MCA component allocator:basic (no configuration) checking for MCA component allocator:basic compile mode... dso checking if MCA component allocator:basic can compile... yes --- MCA component allocator:bucket (no configuration) checking for MCA component allocator:bucket compile mode... dso checking if MCA component allocator:bucket can compile... yes +++ Configuring MCA framework bml checking for no configure components in framework bml... r2 checking for m4 configure components in framework bml... --- MCA component bml:r2 (no configuration) checking for MCA component bml:r2 compile mode... dso checking if MCA component bml:r2 can compile... yes +++ Configuring MCA framework btl checking for no configure components in framework btl... self, sm checking for m4 configure components in framework btl... elan, gm, mx, ofud, openib, portals, tcp, udapl --- MCA component btl:self (no configuration) checking for MCA component btl:self compile mode... dso checking if MCA component btl:self can compile... yes --- MCA component btl:sm (no configuration) checking for MCA component btl:sm compile mode... dso checking if MCA component btl:sm can compile... yes --- MCA component btl:elan (m4 configuration macro) checking for MCA component btl:elan compile mode... dso checking elan/elan.h usability... no checking elan/elan.h presence... no checking for elan/elan.h... no checking if MCA component btl:elan can compile... no --- MCA component btl:gm (m4 configuration macro) checking for MCA component btl:gm compile mode... dso checking gm.h usability... no checking gm.h presence... no checking for gm.h... no checking if MCA component btl:gm can compile... no --- MCA component btl:mx (m4 configuration macro) checking for MCA component btl:mx compile mode... dso checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component btl:mx can compile... no --- MCA component btl:ofud (m4 configuration macro) checking for MCA component btl:ofud compile mode... dso checking for fcntl.h... (cached) yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking if ConnectX XRC support is enabled... no checking if OpenFabrics RDMACM support is enabled... no checking if OpenFabrics IBCM support is enabled... no checking if MCA component btl:ofud can compile... no --- MCA component btl:openib (m4 configuration macro) checking for MCA component btl:openib compile mode... dso checking for fcntl.h... (cached) yes checking for sys/poll.h... (cached) yes checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking if ConnectX XRC support is enabled... no checking if OpenFabrics RDMACM support is enabled... no checking if OpenFabrics IBCM support is enabled... no checking for thread support (needed for ibcm/rdmacm)... posix checking if MCA component btl:openib can compile... no --- MCA component btl:portals (m4 configuration macro) checking for MCA component btl:portals compile mode... dso checking for Portals configuration... utcp checking portals3.h usability... no checking portals3.h presence... no checking for portals3.h... no checking if MCA component btl:portals can compile... no --- MCA component btl:tcp (m4 configuration macro) checking for MCA component btl:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component btl:tcp can compile... yes --- MCA component btl:udapl (m4 configuration macro) checking for MCA component btl:udapl compile mode... dso configure: WARNING: On Linux and --with-udapl was not specified configure: WARNING: Not building the udapl BTL checking if MCA component btl:udapl can compile... no +++ Configuring MCA framework coll checking for no configure components in framework coll... basic, hierarch, inter, self, sm, tuned checking for m4 configure components in framework coll... --- MCA component coll:basic (no configuration) checking for MCA component coll:basic compile mode... dso checking if MCA component coll:basic can compile... yes --- MCA component coll:hierarch (no configuration) checking for MCA component coll:hierarch compile mode... dso checking if MCA component coll:hierarch can compile... yes --- MCA component coll:inter (no configuration) checking for MCA component coll:inter compile mode... dso checking if MCA component coll:inter can compile... yes --- MCA component coll:self (no configuration) checking for MCA component coll:self compile mode... dso checking if MCA component coll:self can compile... yes --- MCA component coll:sm (no configuration) checking for MCA component coll:sm compile mode... dso checking if MCA component coll:sm can compile... yes --- MCA component coll:tuned (no configuration) checking for MCA component coll:tuned compile mode... dso checking if MCA component coll:tuned can compile... yes +++ Configuring MCA framework common checking for no configure components in framework common... sm checking for m4 configure components in framework common... mx, portals --- MCA component common:sm (no configuration) checking for MCA component common:sm compile mode... dso checking if MCA component common:sm can compile... yes --- MCA component common:mx (m4 configuration macro) checking for MCA component common:mx compile mode... dso checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component common:mx can compile... no --- MCA component common:portals (m4 configuration macro) checking for MCA component common:portals compile mode... dso checking for Portals configuration... utcp checking for portals3.h... (cached) no checking if MCA component common:portals can compile... no +++ Configuring MCA framework crcp checking for no configure components in framework crcp... checking for m4 configure components in framework crcp... bkmrk --- MCA component crcp:bkmrk (m4 configuration macro) checking for MCA component crcp:bkmrk compile mode... dso checking if MCA component crcp:bkmrk can compile... no +++ Configuring MCA framework dpm checking for no configure components in framework dpm... orte checking for m4 configure components in framework dpm... --- MCA component dpm:orte (no configuration) checking for MCA component dpm:orte compile mode... dso checking if MCA component dpm:orte can compile... yes +++ Configuring MCA framework io checking for no configure components in framework io... checking for m4 configure components in framework io... romio --- MCA component io:romio (m4 configuration macro) checking for MCA component io:romio compile mode... dso checking if want ROMIO component... yes checking if MPI profiling is enabled... yes *** Configuring ROMIO distribution configure: OMPI configuring in ompi/mca/io/romio/romio configure: running /bin/bash './configure' CFLAGS="-O3 -DNDEBUG -finline-functions -fno-strict-aliasing -pthread" CPPFLAGS=" " FFLAGS="" LDFLAGS=" " --enable-shared --disable-static --prefix=/ --with-mpi=open_mpi --disable-aio --cache-file=/dev/null --srcdir=. Configuring with args CFLAGS=-O3 -DNDEBUG -finline-functions -fno-strict-aliasing -pthread CPPFLAGS= FFLAGS= LDFLAGS= --enable-shared --disable-static --prefix=/ --with-mpi=open_mpi --disable-aio --cache-file=/dev/null --srcdir=. checking for Open MPI support files... in Open MPI source tree -- good checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for architecture... LINUX configure: WARNING: Unknown architecture ... proceeding anyway ROMIO home directory is /opt/openmpi-1.3/ompi/mca/io/romio/romio checking for ranlib... ranlib checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for memalign... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... 8 checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for unistd.h... (cached) yes checking for large file defines... yes setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... yes checking whether we are using the GNU Fortran 77 compiler... no checking whether : accepts -g... no checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for : option to produce PIC... checking if : static flag works... no checking if : supports -c -o file.o... no checking if : supports -c -o file.o... (cached) no checking whether the : linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate setting CC to gcc setting F77 to : setting TEST_CC to mpicc setting TEST_F77 to mpif77 setting CFLAGS to -O3 -DNDEBUG -finline-functions -fno-strict-aliasing -pthread -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating adio/Makefile config.status: creating adio/ad_bgl/Makefile config.status: creating adio/ad_bglockless/Makefile config.status: creating adio/ad_gridftp/Makefile config.status: creating adio/ad_lustre/Makefile config.status: creating adio/ad_nfs/Makefile config.status: creating adio/ad_ntfs/Makefile config.status: creating adio/ad_panfs/Makefile config.status: creating adio/ad_pfs/Makefile config.status: creating adio/ad_pvfs/Makefile config.status: creating adio/ad_pvfs2/Makefile config.status: creating adio/ad_sfs/Makefile config.status: creating adio/ad_testfs/Makefile config.status: creating adio/ad_ufs/Makefile config.status: creating adio/ad_xfs/Makefile config.status: creating adio/common/Makefile config.status: creating adio/include/Makefile config.status: creating doc/Makefile config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating include/Makefile config.status: creating mpi-io/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating test/runtests config.status: creating util/romioinstall config.status: creating mpi-io/glue/openmpi/Makefile config.status: creating util/Makefile config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: /bin/bash './configure' succeeded for ompi/mca/io/romio/romio ROMIO distribution configured successfully checking if MCA component io:romio can compile... yes +++ Configuring MCA framework mpool checking for no configure components in framework mpool... fake, rdma, sm checking for m4 configure components in framework mpool... --- MCA component mpool:fake (no configuration) checking for MCA component mpool:fake compile mode... dso checking if MCA component mpool:fake can compile... yes --- MCA component mpool:rdma (no configuration) checking for MCA component mpool:rdma compile mode... dso checking if MCA component mpool:rdma can compile... yes --- MCA component mpool:sm (no configuration) checking for MCA component mpool:sm compile mode... dso checking if MCA component mpool:sm can compile... yes +++ Configuring MCA framework mtl checking for no configure components in framework mtl... checking for m4 configure components in framework mtl... mx, portals, psm --- MCA component mtl:mx (m4 configuration macro) checking for MCA component mtl:mx compile mode... dso checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component mtl:mx can compile... no --- MCA component mtl:portals (m4 configuration macro) checking for MCA component mtl:portals compile mode... dso checking for Portals configuration... utcp checking for portals3.h... (cached) no checking if MCA component mtl:portals can compile... no --- MCA component mtl:psm (m4 configuration macro) checking for MCA component mtl:psm compile mode... dso checking psm.h usability... no checking psm.h presence... no checking for psm.h... no checking if MCA component mtl:psm can compile... no +++ Configuring MCA framework osc checking for no configure components in framework osc... pt2pt, rdma checking for m4 configure components in framework osc... --- MCA component osc:pt2pt (no configuration) checking for MCA component osc:pt2pt compile mode... dso checking if MCA component osc:pt2pt can compile... yes --- MCA component osc:rdma (no configuration) checking for MCA component osc:rdma compile mode... dso checking if MCA component osc:rdma can compile... yes +++ Configuring MCA framework pml checking for no configure components in framework pml... cm, ob1 checking for m4 configure components in framework pml... crcpw, v --- MCA component pml:cm (no configuration) checking for MCA component pml:cm compile mode... dso checking if MCA component pml:cm can compile... yes --- MCA component pml:ob1 (no configuration) checking for MCA component pml:ob1 compile mode... dso checking if MCA component pml:ob1 can compile... yes --- MCA component pml:crcpw (m4 configuration macro) checking for MCA component pml:crcpw compile mode... dso checking if MCA component pml:crcpw can compile... no --- MCA component pml:v (m4 configuration macro) checking for MCA component pml:v compile mode... dso +++ Configuring MCA framework vprotocol checking for no configure components in framework vprotocol... pessimist checking for m4 configure components in framework vprotocol... --- MCA component vprotocol:pessimist (no configuration) checking for MCA component vprotocol:pessimist compile mode... dso checking if MCA component vprotocol:pessimist can compile... yes checking if MCA component pml:v can compile... yes +++ Configuring MCA framework pubsub checking for no configure components in framework pubsub... orte checking for m4 configure components in framework pubsub... --- MCA component pubsub:orte (no configuration) checking for MCA component pubsub:orte compile mode... dso checking if MCA component pubsub:orte can compile... yes +++ Configuring MCA framework rcache checking for no configure components in framework rcache... vma checking for m4 configure components in framework rcache... --- MCA component rcache:vma (no configuration) checking for MCA component rcache:vma compile mode... dso checking if MCA component rcache:vma can compile... yes +++ Configuring MCA framework topo checking for no configure components in framework topo... unity checking for m4 configure components in framework topo... --- MCA component topo:unity (no configuration) checking for MCA component topo:unity compile mode... dso checking if MCA component topo:unity can compile... yes ============================================================================ == Symbol Visibility Feature ============================================================================ checking if gcc supports -fvisibility... yes checking enable symbol visibility... yes configure: WARNING: -fvisibility=hidden has been added to CFLAGS ============================================================================ == Contributed software setup ============================================================================ *** Configuring contributed software packages checking which contributed software packages should be disabled... --- vt (m4 configuration macro) configure: OMPI configuring in ompi/contrib/vt/vt configure: running /bin/bash './configure' --disable-option-checking 'MPICC=gcc' --with-openmpi '--with-mpi-inc-dir=/opt/openmpi-1.3/ompi/include' --with-mpi-status-size=5 --disable-config-titles --disable-config-summary '--prefix=/' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes configure: builddir: /opt/openmpi-1.3/ompi/contrib/vt/vt configure: srcdir: /opt/openmpi-1.3/ompi/contrib/vt/vt checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for ar... ar checking for ranlib... ranlib checking dependency style of gcc... gcc3 checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking fnmatch.h usability... yes checking fnmatch.h presence... yes checking for fnmatch.h... yes checking for size_t... yes checking size of void*... 8 checking size of int... 4 checking size of long... 8 checking size of mode_t... 4 checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for strdup... yes checking zlib.h usability... no checking zlib.h presence... no checking for zlib.h... no configure: error: no zlib.h found; check path for ZLIB package first... configure: configuring in extlib/otf (/opt/openmpi-1.3/ompi/contrib/vt/vt/extlib/otf) configure: running /bin/bash ./configure --without-zlib --prefix="/" --exec-prefix="/" --bindir="${exec_prefix}/bin" --libdir="${exec_prefix}/lib" --includedir="${prefix}/include" --docdir="${datarootdir}/doc/otf" --cache-file="/dev/null" --srcdir="." checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for g++... g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking vtf3.h usability... no checking vtf3.h presence... no checking for vtf3.h... no configure: error: no vtf3.h found; check path for VTF3 package first... checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for strdup... yes checking for fseeko... yes checking for ftello... yes checking for size_t... yes checking size of long... 8 configure: creating ./config.status config.status: creating Makefile config.status: creating otflib/Makefile config.status: creating otflib/OTF_inttypes_unix.h config.status: creating otflib_py/Makefile config.status: creating tools/Makefile config.status: creating tools/otfaux/Makefile config.status: creating tools/otfcompress/Makefile config.status: creating tools/otfconfig/Makefile config.status: creating tools/otfdump/Makefile config.status: creating tools/otfmerge/Makefile config.status: creating tools/otf2vtf/Makefile config.status: creating tools/vtf2otf/Makefile config.status: creating docu/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands checking for platform... linux configure: selected timer: TIMER_CYCLE_COUNTER checking for compiler instrumentation... gnu checking bfd.h usability... no checking bfd.h presence... no checking for bfd.h... no configure: error: no bfd.h found; check path for BFD package first... configure: WARNING: no usable BFD found; using nm-output file for addr./symbol mapping checking libiberty.h usability... no checking libiberty.h presence... no checking for libiberty.h... no configure: error: no libiberty.h found; check path for LIBERTY package first... checking for mpicc... gcc checking for the value of MPI_STATUS_SIZE... skipped (--with-mpi-status-size=5) checking whether MPI supports file access... no checking for OpenMP flag of C compiler... -fopenmp checking omp.h usability... yes checking omp.h presence... yes checking for omp.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for __malloc_hook... yes checking for __realloc_hook... yes checking for __free_hook... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether linking with -ldl works... yes checking whether RTLD_NEXT is declared... no checking whether we need to define _GNU_SOURCE to get RTLD_NEXT... yes checking for creat64... yes checking for fopen64... yes checking for fseeko... yes checking for fseeko64... yes checking for lseek64... yes checking for fsetpos64... yes checking for open64... yes checking for pread64... yes checking for pwrite64... yes checking papi.h usability... no checking papi.h presence... no checking for papi.h... no configure: error: no papi.h found; check path for PAPI package first... configure: creating ./config.status config.status: creating Makefile config.status: creating util/Makefile config.status: creating extlib/Makefile config.status: creating vtlib/Makefile config.status: creating tools/Makefile config.status: creating tools/compwrap/Makefile config.status: creating tools/compwrap/vtcc-wrapper-data.txt config.status: creating tools/compwrap/vtcxx-wrapper-data.txt config.status: creating tools/compwrap/vtf77-wrapper-data.txt config.status: creating tools/compwrap/vtf90-wrapper-data.txt config.status: creating tools/opari/Makefile config.status: creating tools/opari/tool/Makefile config.status: creating tools/opari/doc/Makefile config.status: creating tools/vtdyn/Makefile config.status: creating tools/vtdyn/dynattlib/Makefile config.status: creating tools/vtfilter/Makefile config.status: creating tools/vtunify/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands configure: /bin/bash './configure' succeeded for ompi/contrib/vt/vt checking if contributed component vt can compile... yes ============================================================================ == Final top-level OMPI configuration ============================================================================ *** Libevent 3rd party event handler checking for ANSI C header files... (cached) yes checking for fcntl.h... (cached) yes checking for stdarg.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for poll.h... (cached) yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking for unistd.h... (cached) yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking for sys/time.h... (cached) yes checking for sys/queue.h... (cached) yes checking sys/event.h usability... no checking sys/event.h presence... no checking for sys/event.h... no checking for sys/ioctl.h... (cached) yes checking sys/devpoll.h usability... no checking sys/devpoll.h presence... no checking for sys/devpoll.h... no checking for TAILQ_FOREACH in sys/queue.h... yes checking for timeradd in sys/time.h... yes checking whether time.h and sys/time.h may both be included... yes checking for gettimeofday... yes checking for vasprintf... (cached) yes checking for fcntl... yes checking for F_SETFD in fcntl.h... yes checking for select... yes checking for poll... yes checking for epoll_ctl... yes checking for working epoll library interface... no checking for working epoll system call... no checking for port_create... no checking for pid_t... yes checking for size_t... yes checking for u_int64_t... yes checking for u_int32_t... yes checking for u_int16_t... yes checking for u_int8_t... yes *** Libtool configuration checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking whether we are using the GNU Fortran 77 compiler... (cached) yes checking whether gfortran accepts -g... (cached) yes checking whether we are using the GNU Fortran compiler... (cached) yes checking whether gfortran accepts -g... (cached) yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate *** GNU libltdl setup configure: OMPI configuring in opal/libltdl configure: running /bin/bash './configure' '--prefix=/' --enable-ltdl-convenience --disable-ltdl-install --enable-shared --disable-static --cache-file=/dev/null --srcdir=. configure: WARNING: unrecognized options: --enable-ltdl-convenience checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for style of include used by make... GNU checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking which extension is used for runtime loadable modules... .so checking which variable specifies run-time module search path... LD_LIBRARY_PATH checking for the default library search path... /lib /usr/lib /usr/lib/alsa-lib /usr/local/lib /lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu checking for library containing dlopen... -ldl checking for dlerror... yes checking for shl_load... (cached) no checking for shl_load in -ldld... (cached) no checking for dld_link in -ldld... no checking for _ prefix in compiled symbols... no checking whether deplibs are loaded by dlopen... yes checking for argz.h... yes checking for error_t... yes checking for argz_add... yes checking for argz_append... yes checking for argz_count... yes checking for argz_create_sep... yes checking for argz_insert... yes checking for argz_next... yes checking for argz_stringify... yes checking if argz actually works... yes checking whether libtool supports -dlopen/-dlpreopen... yes checking for unistd.h... (cached) yes checking for dl.h... no checking for sys/dl.h... no checking for dld.h... no checking for mach-o/dyld.h... no checking for dirent.h... yes checking for closedir... yes checking for opendir... yes checking for readdir... yes checking for strlcat... no checking for strlcpy... no configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --enable-ltdl-convenience configure: /bin/bash './configure' succeeded for opal/libltdl checking for libtool-supplied linker flags... -Wl,--export-dynamic -lnsl -lutil -lm -ldl *** Compiler flags checking which of CFLAGS are ok for TotalView modules... -DNDEBUG -finline-functions -fno-strict-aliasing -pthread -fvisibility=hidden checking extra CFLAGS for TotalView modules... -g *** Wrapper compiler flags checking for OPAL CPPFLAGS... checking for OPAL CFLAGS... -pthread checking for OPAL CXXFLAGS... -pthread checking for OPAL LDFLAGS... checking for OPAL LIBS... -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl checking for OPAL extra include dirs... checking for ORTE CPPFLAGS... checking for ORTE CFLAGS... -pthread checking for ORTE CXXFLAGS... -pthread checking for ORTE LDFLAGS... checking for ORTE LIBS... -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl checking for ORTE extra include dirs... checking for OMPI CPPFLAGS... checking for OMPI CFLAGS... -pthread checking for OMPI CXXFLAGS... -pthread checking for OMPI FFLAGS... -pthread checking for OMPI FCFLAGS... -pthread checking for OMPI LDFLAGS... checking for OMPI LIBS... -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl checking for OMPI extra include dirs... *** Final output configure: creating ./config.status config.status: creating ompi/include/ompi/version.h config.status: creating orte/include/orte/version.h config.status: creating opal/include/opal/version.h config.status: creating ompi/tools/wrappers/ompi_wrapper_script config.status: creating opal/mca/installdirs/config/install_dirs.h config.status: creating opal/mca/paffinity/linux/plpa/Makefile config.status: creating opal/mca/paffinity/linux/plpa/config/Makefile config.status: creating opal/mca/paffinity/linux/plpa/src/Makefile config.status: creating opal/mca/paffinity/linux/plpa/src/libplpa/Makefile config.status: creating opal/mca/paffinity/linux/plpa/src/plpa-info/Makefile config.status: creating opal/mca/paffinity/linux/plpa/src/plpa-taskset/Makefile config.status: creating opal/mca/backtrace/Makefile config.status: creating opal/mca/backtrace/darwin/Makefile config.status: creating opal/mca/backtrace/execinfo/Makefile config.status: creating opal/mca/backtrace/none/Makefile config.status: creating opal/mca/backtrace/printstack/Makefile config.status: creating opal/mca/carto/Makefile config.status: creating opal/mca/carto/auto_detect/Makefile config.status: creating opal/mca/carto/file/Makefile config.status: creating opal/mca/crs/Makefile config.status: creating opal/mca/crs/blcr/Makefile config.status: creating opal/mca/crs/none/Makefile config.status: creating opal/mca/crs/self/Makefile config.status: creating opal/mca/installdirs/Makefile config.status: creating opal/mca/installdirs/config/Makefile config.status: creating opal/mca/installdirs/env/Makefile config.status: creating opal/mca/maffinity/Makefile config.status: creating opal/mca/maffinity/first_use/Makefile config.status: creating opal/mca/maffinity/libnuma/Makefile config.status: creating opal/mca/memchecker/Makefile config.status: creating opal/mca/memchecker/valgrind/Makefile config.status: creating opal/mca/memcpy/Makefile config.status: creating opal/mca/memory/Makefile config.status: creating opal/mca/memory/malloc_solaris/Makefile config.status: creating opal/mca/memory/mallopt/Makefile config.status: creating opal/mca/memory/ptmalloc2/Makefile config.status: creating opal/mca/paffinity/Makefile config.status: creating opal/mca/paffinity/darwin/Makefile config.status: creating opal/mca/paffinity/linux/Makefile config.status: creating opal/mca/paffinity/posix/Makefile config.status: creating opal/mca/paffinity/solaris/Makefile config.status: creating opal/mca/paffinity/windows/Makefile config.status: creating opal/mca/timer/Makefile config.status: creating opal/mca/timer/aix/Makefile config.status: creating opal/mca/timer/altix/Makefile config.status: creating opal/mca/timer/catamount/Makefile config.status: creating opal/mca/timer/darwin/Makefile config.status: creating opal/mca/timer/linux/Makefile config.status: creating opal/mca/timer/solaris/Makefile config.status: creating opal/mca/timer/windows/Makefile config.status: creating orte/mca/errmgr/Makefile config.status: creating orte/mca/errmgr/default/Makefile config.status: creating orte/mca/ess/Makefile config.status: creating orte/mca/ess/alps/Makefile config.status: creating orte/mca/ess/cnos/Makefile config.status: creating orte/mca/ess/env/Makefile config.status: creating orte/mca/ess/hnp/Makefile config.status: creating orte/mca/ess/lsf/Makefile config.status: creating orte/mca/ess/portals_utcp/Makefile config.status: creating orte/mca/ess/singleton/Makefile config.status: creating orte/mca/ess/slurm/Makefile config.status: creating orte/mca/ess/tool/Makefile config.status: creating orte/mca/filem/Makefile config.status: creating orte/mca/filem/rsh/Makefile config.status: creating orte/mca/grpcomm/Makefile config.status: creating orte/mca/grpcomm/bad/Makefile config.status: creating orte/mca/grpcomm/basic/Makefile config.status: creating orte/mca/grpcomm/cnos/Makefile config.status: creating orte/mca/iof/Makefile config.status: creating orte/mca/iof/hnp/Makefile config.status: creating orte/mca/iof/orted/Makefile config.status: creating orte/mca/iof/tool/Makefile config.status: creating orte/mca/notifier/Makefile config.status: creating orte/mca/notifier/syslog/Makefile config.status: creating orte/mca/odls/Makefile config.status: creating orte/mca/odls/default/Makefile config.status: creating orte/mca/oob/Makefile config.status: creating orte/mca/oob/tcp/Makefile config.status: creating orte/mca/plm/Makefile config.status: creating orte/mca/plm/alps/Makefile config.status: creating orte/mca/plm/lsf/Makefile config.status: creating orte/mca/plm/rsh/Makefile config.status: creating orte/mca/plm/slurm/Makefile config.status: creating orte/mca/plm/tm/Makefile config.status: creating orte/mca/plm/xgrid/Makefile config.status: creating orte/mca/ras/Makefile config.status: creating orte/mca/ras/alps/Makefile config.status: creating orte/mca/ras/gridengine/Makefile config.status: creating orte/mca/ras/loadleveler/Makefile config.status: creating orte/mca/ras/lsf/Makefile config.status: creating orte/mca/ras/slurm/Makefile config.status: creating orte/mca/ras/tm/Makefile config.status: creating orte/mca/rmaps/Makefile config.status: creating orte/mca/rmaps/rank_file/Makefile config.status: creating orte/mca/rmaps/round_robin/Makefile config.status: creating orte/mca/rmaps/seq/Makefile config.status: creating orte/mca/rml/Makefile config.status: creating orte/mca/rml/ftrm/Makefile config.status: creating orte/mca/rml/oob/Makefile config.status: creating orte/mca/routed/Makefile config.status: creating orte/mca/routed/binomial/Makefile config.status: creating orte/mca/routed/direct/Makefile config.status: creating orte/mca/routed/linear/Makefile config.status: creating orte/mca/snapc/Makefile config.status: creating orte/mca/snapc/full/Makefile config.status: creating ompi/mca/allocator/Makefile config.status: creating ompi/mca/allocator/basic/Makefile config.status: creating ompi/mca/allocator/bucket/Makefile config.status: creating ompi/mca/bml/Makefile config.status: creating ompi/mca/bml/r2/Makefile config.status: creating ompi/mca/btl/Makefile config.status: creating ompi/mca/btl/elan/Makefile config.status: creating ompi/mca/btl/gm/Makefile config.status: creating ompi/mca/btl/mx/Makefile config.status: creating ompi/mca/btl/ofud/Makefile config.status: creating ompi/mca/btl/openib/Makefile config.status: creating ompi/mca/btl/portals/Makefile config.status: creating ompi/mca/btl/self/Makefile config.status: creating ompi/mca/btl/sm/Makefile config.status: creating ompi/mca/btl/tcp/Makefile config.status: creating ompi/mca/btl/udapl/Makefile config.status: creating ompi/mca/coll/Makefile config.status: creating ompi/mca/coll/basic/Makefile config.status: creating ompi/mca/coll/hierarch/Makefile config.status: creating ompi/mca/coll/inter/Makefile config.status: creating ompi/mca/coll/self/Makefile config.status: creating ompi/mca/coll/sm/Makefile config.status: creating ompi/mca/coll/tuned/Makefile config.status: creating ompi/mca/common/Makefile config.status: creating ompi/mca/common/mx/Makefile config.status: creating ompi/mca/common/portals/Makefile config.status: creating ompi/mca/common/sm/Makefile config.status: creating ompi/mca/crcp/Makefile config.status: creating ompi/mca/crcp/bkmrk/Makefile config.status: creating ompi/mca/dpm/Makefile config.status: creating ompi/mca/dpm/orte/Makefile config.status: creating ompi/mca/io/Makefile config.status: creating ompi/mca/io/romio/Makefile config.status: creating ompi/mca/mpool/Makefile config.status: creating ompi/mca/mpool/fake/Makefile config.status: creating ompi/mca/mpool/rdma/Makefile config.status: creating ompi/mca/mpool/sm/Makefile config.status: creating ompi/mca/mtl/Makefile config.status: creating ompi/mca/mtl/mx/Makefile config.status: creating ompi/mca/mtl/portals/Makefile config.status: creating ompi/mca/mtl/psm/Makefile config.status: creating ompi/mca/osc/Makefile config.status: creating ompi/mca/osc/pt2pt/Makefile config.status: creating ompi/mca/osc/rdma/Makefile config.status: creating ompi/mca/pml/Makefile config.status: creating ompi/mca/pml/cm/Makefile config.status: creating ompi/mca/pml/crcpw/Makefile config.status: creating ompi/mca/pml/ob1/Makefile config.status: creating ompi/mca/pml/v/mca/vprotocol/Makefile config.status: creating ompi/mca/pml/v/mca/vprotocol/pessimist/Makefile config.status: creating ompi/mca/pml/v/Makefile config.status: creating ompi/mca/pubsub/Makefile config.status: creating ompi/mca/pubsub/orte/Makefile config.status: creating ompi/mca/rcache/Makefile config.status: creating ompi/mca/rcache/vma/Makefile config.status: creating ompi/mca/topo/Makefile config.status: creating ompi/mca/topo/unity/Makefile config.status: creating ompi/contrib/vt/Makefile config.status: creating ompi/contrib/vt/wrappers/Makefile config.status: creating ompi/contrib/vt/wrappers/mpicc-vt-wrapper-data.txt config.status: creating ompi/contrib/vt/wrappers/mpic++-vt-wrapper-data.txt config.status: creating ompi/contrib/vt/wrappers/mpif77-vt-wrapper-data.txt config.status: creating ompi/contrib/vt/wrappers/mpif90-vt-wrapper-data.txt config.status: creating Makefile config.status: creating config/Makefile config.status: creating contrib/Makefile config.status: creating opal/Makefile config.status: creating opal/etc/Makefile config.status: creating opal/include/Makefile config.status: creating opal/asm/Makefile config.status: creating opal/event/Makefile config.status: creating opal/event/compat/Makefile config.status: creating opal/event/compat/sys/Makefile config.status: creating opal/util/Makefile config.status: creating opal/util/keyval/Makefile config.status: creating opal/mca/base/Makefile config.status: creating opal/tools/wrappers/Makefile config.status: creating opal/tools/wrappers/opalcc-wrapper-data.txt config.status: creating opal/tools/wrappers/opalc++-wrapper-data.txt config.status: creating opal/tools/opal-checkpoint/Makefile config.status: creating opal/tools/opal-restart/Makefile config.status: creating orte/Makefile config.status: creating orte/include/Makefile config.status: creating orte/etc/Makefile config.status: creating orte/tools/orted/Makefile config.status: creating orte/tools/orterun/Makefile config.status: creating orte/tools/wrappers/Makefile config.status: creating orte/tools/wrappers/ortecc-wrapper-data.txt config.status: creating orte/tools/wrappers/ortec++-wrapper-data.txt config.status: creating orte/tools/orte-checkpoint/Makefile config.status: creating orte/tools/orte-iof/Makefile config.status: creating orte/tools/orte-restart/Makefile config.status: creating orte/tools/orte-ps/Makefile config.status: creating orte/tools/orte-clean/Makefile config.status: creating ompi/Makefile config.status: creating ompi/etc/Makefile config.status: creating ompi/include/Makefile config.status: creating ompi/include/mpif.h config.status: creating ompi/include/mpif-config.h config.status: creating ompi/datatype/Makefile config.status: creating ompi/debuggers/Makefile config.status: creating ompi/mpi/c/Makefile config.status: creating ompi/mpi/c/profile/Makefile config.status: creating ompi/mpi/cxx/Makefile config.status: creating ompi/mpi/f77/Makefile config.status: creating ompi/mpi/f77/profile/Makefile config.status: creating ompi/mpi/f90/Makefile config.status: creating ompi/mpi/f90/fortran_kinds.sh config.status: creating ompi/mpi/f90/fortran_sizes.h config.status: creating ompi/mpi/f90/scripts/Makefile config.status: creating ompi/tools/ompi_info/Makefile config.status: creating ompi/tools/wrappers/Makefile config.status: creating ompi/tools/wrappers/mpicc-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpic++-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpif77-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpif90-wrapper-data.txt config.status: creating ompi/tools/ortetools/Makefile config.status: creating ompi/tools/ompi-server/Makefile config.status: creating test/Makefile config.status: creating test/event/Makefile config.status: creating test/asm/Makefile config.status: creating test/class/Makefile config.status: creating test/support/Makefile config.status: creating test/threads/Makefile config.status: creating test/peruse/Makefile config.status: creating test/datatype/Makefile config.status: creating opal/include/opal_config.h config.status: creating orte/include/orte_config.h config.status: creating ompi/include/ompi_config.h config.status: creating ompi/include/mpi.h config.status: creating opal/mca/paffinity/linux/plpa/src/libplpa/plpa_config.h config.status: creating opal/mca/paffinity/linux/plpa/src/libplpa/plpa.h config.status: executing depfiles commands config.status: executing libtool commands