The Terahertz Spectrum And Quantum Chemical Assignment Of 2,2,-Bithiophene In Cyclohexane

In press, in the journal Vibrational Spectroscopy. In a bit of a departure from the last several terahertz (THz) papers, this study involves the simulation of the solution-phase THz spectrum of the very, very thoroughly studied 2,2-bithiophene in solution (cis and trans geometries and lowest-frequency vibrational modes are provided in the figure below), a phase both easier and more difficult than the solid-state density functional theory (DFT) calculations that have been the mainstay of previous studies. Simplicity comes from the molecular symmetry and smaller size of the system under study, with no issues of the temperature dependence of the lattice constants or the intermolecular interaction predictions complicating the spectral assignment of the lowest frequency modes. The difficulty comes from the ability to employ multiple theoretical models to study the system and the need for far higher levels of theory in the gas phase to perform an analysis worthy of experimental comparison.

In this study, the DFT and MP2 quantum chemical calculations were used to consider molecular geometry, cis and trans conformational energy differences, rotational barrier heights, the prediction of normal mode energies, and relative peak intensities.

One topic addressed in solution that is not an issue in the crystals studied to date are the accessibility of relative conformational minima at ambient conditions (kT, room temperature). In the case of 2,2-bithiophene, the conformational flexibility is around the exocyclic thiophene-thiophene bond. With the description of the potential energy surface (PES) for rotation about the exocyclic bond determined by conformational calculations, the second step is the determination of relative populations of the cis and trans forms as a function of temperature. In this case, weighting of the PES by the Boltzmann distribution function yields the plot shown in the bottom of the figure below, from which the relative cis and trans populations can be determined by integration of the 0 to 90 (cis) and 90 to 180 (trans) regions.

The long-short of this particular study, which I save for the article itself, is that no single theory provides all the best answers, but sufficiently high levels of theory all do settle into the reasonable vicinity of accurate. At least, to the extent that all of the experimental data is in agreement.

Anna M. Fedor1, Damian G. Allis1,2, and Timothy M. Korter1

1. Department of Chemistry, Syracuse University, Syracuse, NY 13244 USA

2. Nanorex, Inc. Bloomfield Hills, MI 48302-7188 USA

Abstract: The room temperature solution-phase terahertz (THz, 7 to 165 cm-1) spectrum of 2,2-bithiophene in cyclohexane is reported. Density functional theory (B3LYP) and ab initio (MP2) methods employing the 6-311++G(2d,2p) and aug-cc-pVDZ basis sets are used to assign the THz vibrational structure and determine the relative populations of the cis and trans conformations, as well as the trans-trans rotational barrier height and the effects of the cyclohexane solvent on the predicted molecular geometries and vibrational frequencies. Significant differences are seen in the performance of the different theoretical methods, with the best performing method dependent upon the molecular property of interest. The best fit model of the experimental THz spectrum is achieved using MP2/aug-cc-pVDZ, which places the relative trans and cis populations at 54% and 46%, respectively.

www.elsevier.com/wps/find/journaldescription.cws_home/504273/description#description
en.wikipedia.org/wiki/Terahertz
en.wikipedia.org/wiki/Thiophene
en.wikipedia.org/wiki/Density_functional_theory
en.wikipedia.org/wiki/M%C3%B8ller-Plesset_perturbation_theory
en.wikipedia.org/wiki/KT_%28energy%29
en.wikipedia.org/wiki/Boltzmann_distribution
chemistry.syr.edu
www.nanorex.com

Terahertz Science And Technology For Military And Security Applications

Christmas came one day late.

terahertz book

A special issue of the International Journal of High Speed Electronics and Systems dedicated to a previous symposium on terahertz spectroscopy and imaging applications has made its way into hardcover in the form of a Selected Topics in Electronics and Systems volume (Vol. 46). The original article was blogged on this site in post #50, including the abstract and a couple of figures from the article. The book reproduces all images in greyscale, although the cover image includes an HMX molecule in pixelated technicolor. In the interest of readability (had I known…), I’m posting the images here as a single pdf (3.0 MB).

hmx petn

Click here or on the image above to download the image pdf.

According to amazon.com:

The inherent advantages and potential payoffs of the terahertz (THz) regime for military and security applications serve as an important driver for interest in new THz-related science and technology. In particular, the very rapid growth in more recent years is arguably most closely linked to the potential payoffs of THz sensing and imaging (THz-S&I).

This book presents some of the leading fundamental research efforts towards the realization of practical THz-S&I capabilities for military and security applications. Relevant subjects include theoretical prediction and/or measurement of THz spectroscopic phenomenon in solid-state materials such as high explosives (e.g. HMX, PETN, RDX, TNT, etc.), carbon-fiber composites, biological agents (e.g. DNA, RNA, proteins, amino acids) and organic-semiconductor nanostructures. Individual papers also address the effective utilization of state-of-the-art THz-frequency technology in military and security relevant scenarios such as standoff S&I, screening of packages and personnel, and perimeter defense. Technical papers introduce novel devices and/or concepts that enhance THz source and detector performance, enabling completely new types of sensor functionality at THz frequency (e.g. detection at nanoscale/molecular levels), and defining new and innovative sensing modalities (e.g. remote personnel identification) for defense and security. Therefore, the collective research presented here represents a valuable source of information on the evolving field of THz-S&I for military and security applications.

Get your copy HERE. In the right discourse community, it makes a great gift.

www.worldscinet.com/ijhses/ijhses.shtml
en.wikipedia.org/wiki/Terahertz_radiation
www.worldscibooks.com/series/stes_series.shtml
www.worldscibooks.com/engineering/6608.html
www.somewhereville.com/?p=50
en.wikipedia.org/wiki/HMX
www.amazon.com
www.amazon.com/Terahertz-Technology-Military-Applications-Electronics/dp/9812771794/…